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Identification and characterization of thousands of bacteriophage satellites across bacteria

Jorge Moura de Sousa , Alfred Fillol-Salom , José Penadés , Eduardo P.C. Rocha
2022
Preprints, Working Papers, ... hal-03838678v1
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Genome diversification via genetic exchanges between temperate and virulent bacteriophages

Jorge A. Moura de Sousa , Eugen Pfeifer , Marie Touchon , Eduardo P. C. Rocha
2020
Preprints, Working Papers, ... hal-02988810v1
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Bacteriophages benefit from generalized transduction

Alfred Fillol-Salom , Alsaadiid Ahlam , Jorge Moura de Sousa , Li Zhong , Kevin R Fosterid et al.
Journal articles hal-02329705v1
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Bacteria have numerous distinctive groups of phage-plasmids with conserved phage and variable plasmid gene repertoires

Eugen Pfeifer , Jorge A Moura de Sousa , Marie Touchon , Eduardo P. C. Rocha
Nucleic Acids Research, 2021, 49 (5), pp.2655-2673. ⟨10.1093/nar/gkab064⟩
Journal articles hal-03357369v1
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Embracing the enemy: the diversification of microbial gene repertoires by phage-mediated horizontal gene transfer

Marie Touchon , Jorge A Moura de Sousa , Eduardo P. C. Rocha
Current Opinion in Microbiology, 2017, 38, pp.66-73. ⟨10.1016/j.mib.2017.04.010⟩
Journal articles pasteur-03111100v1
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Phylogenetic background and habitat drive the genetic diversification of Escherichia coli

Marie Touchon , Amandine Perrin , Jorge A Moura de Sousa , Belinda Vangchhia , Samantha Burn et al.
PLoS Genetics, 2020, 16 (6), pp.e1008866. ⟨10.1371/journal.pgen.1008866⟩
Journal articles pasteur-02866790v2
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Competition between phage-resistance mechanisms determines the outcome of bacterial co-existence

Olaya Rendueles , Jorge A Moura de Sousa , Eduardo P.C. Rocha
2022
Preprints, Working Papers, ... pasteur-03795539v1
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To catch a hijacker: abundance, evolution and genetic diversity of P4-like bacteriophage satellites

Jorge A Moura de Sousa , Eduardo P. C. Rocha
Philosophical Transactions of the Royal Society B: Biological Sciences, 2022, 377 (1842), pp.20200475. ⟨10.1098/rstb.2020.0475⟩
Journal articles pasteur-03684736v1
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Selfish, promiscuous, and sometimes useful: how mobile genetic elements drive horizontal gene transfer in microbial populations

Matthieu Haudiquet , Jorge A Moura de Sousa , Marie Touchon , Eduardo P. C. Rocha
Philosophical Transactions of the Royal Society of London. B (1887–1895), 2022, 377 (1861), pp.20210234. ⟨10.1098/rstb.2021.0234⟩
Journal articles pasteur-03684761v2
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Environmental structure drives resistance to phages and antibiotics during phage therapy and to invading lysogens during colonisation

Jorge A Moura de Sousa , Eduardo P C Rocha
Scientific Reports, 2019, 9 (1), pp.3149. ⟨10.1038/s41598-019-39773-3⟩
Journal articles pasteur-02098383v1
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Causes and Consequences of Bacteriophage Diversification via Genetic Exchanges across Lifestyles and Bacterial Taxa

Jorge A Moura de Sousa , Eugen Pfeifer , Marie Touchon , Eduardo P. C. Rocha
Molecular Biology and Evolution, 2021, 38 (6), pp.2497-2512. ⟨10.1093/molbev/msab044⟩
Journal articles hal-03357362v1