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Protein-ligand interaction prediction: an improved chemogenomics approach.
Laurent Jacob
,
Jean-Philippe Vert
Journal articles
hal-00433572v1
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The optimal assignment kernel is not positive definite
Jean-Philippe Vert
2008
Preprints, Working Papers, ...
hal-00218278v1
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SIRENE: Supervised Inference of Regulatory Networks
Fantine Mordelet
,
Jean-Philippe Vert
Journal articles
hal-00259119v1
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Epigenomic Alterations in Breast Carcinoma from Primary Tumor to Locoregional Recurrences
Matahi Moarii
,
Alice Pinheiro
,
Brigitte Sigal-Zafrani
,
Alain Fourquet
,
Martial Caly
,
et al.
Journal articles
hal-01064211v1
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A statistical approach for inferring the three-dimensional structure of the genome
Nelle Varoquaux
,
Ferhat Ay
,
William Stafford Noble
,
Jean-Philippe Vert
Journal articles
hal-01101869v1
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Protein network inference from multiple genomic data: a supervised approach.
Y. Yamanishi
,
Jean-Philippe Vert
,
M. Kanehisa
Journal articles
hal-00433586v1
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NetNorM: capturing cancer-relevant information in somatic exome mutation data with gene networks for cancer stratification and prognosis
Marine Le Morvan
,
Andrei Zinovyev
,
Jean-Philippe Vert
2016
Preprints, Working Papers, ...
hal-01341856v2
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Changes in genome organization of parasite-specific gene families during the Plasmodium transmission stages
Evelien Bunnik
,
Kate Cook
,
Nelle Varoquaux
,
Gayani Batugedara
,
Jacques Prudhomme
,
et al.
Nature Communications, 2018, 9 (1)
Journal articles
hal-01985437v1
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Continuous Embeddings of DNA Sequencing Reads and Application to Metagenomics
Romain Menegaux
,
Jean-Philippe Vert
Journal articles
hal-02444747v1
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Gene regulation inference from single-cell RNA-seq data with linear differential equations and velocity inference
Pierre-Cyril Aubin-Frankowski
,
Jean-Philippe Vert
Journal articles
hal-03114385v1
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DSIR: Assessing the Design of Highly Potent siRNA by Testing a Set of Cancer-Relevant Target Genes
Odile Filhol
,
Delphine Ciais
,
Christian Lajaunie
,
Peggy Charbonnier
,
Nicolas Foveau
,
et al.
Journal articles
hal-02084719v1
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Crowdsourced assessment of common genetic contribution to predicting anti-TNF treatment response in rheumatoid arthritis.
S Sieberts
,
Fan Zhu
,
Javier García-García
,
Eli Stahl
,
Abhishek Pratap
,
et al.
Journal articles
hal-01420921v1
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Graph kernels based on tree patterns for molecules
Pierre Mahé
,
Jean-Philippe Vert
2006
Preprints, Working Papers, ...
hal-00095488v1
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Reconstruction of biological networks by supervised machine learning approaches
Jean-Philippe Vert
2008
Preprints, Working Papers, ...
hal-00283945v2
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The Wnt Receptor Ryk Reduces Neuronal and Cell Survival Capacity by Repressing FOXO Activity During the Early Phases of Mutant Huntingtin Pathogenicity
Cendrine Tourette
,
Francesca Farina
,
Rafael P. Vasquez-Manrique
,
Anne-Marie Orfila
,
Jessica Voisin
,
et al.
Journal articles
hal-01076146v1
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A path following algorithm for the graph matching problem.
Mikhail Zaslavskiy
,
Francis Bach
,
Jean-Philippe Vert
Journal articles
hal-00433567v1
|
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The group fused Lasso for multiple change-point detection
Kevin Bleakley
,
Jean-Philippe Vert
2011
Preprints, Working Papers, ...
hal-00602121v1
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Many-to-Many Graph Matching: a Continuous Relaxation Approach
Mikhail Zaslavskiy
,
Francis Bach
,
Jean-Philippe Vert
2009
Preprints, Working Papers, ...
hal-00465916v1
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Integrative DNA methylation and gene expression analysis to assess the universality of the CpG island methylator phenotype
Matahi Moarii
,
Fabien Reyal
,
Jean-Philippe Vert
Journal articles
hal-01246676v1
|
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Large-scale functional RNAi screen in C. elegans identifies genes that regulate the dysfunction of mutant polyglutamine neurons.
François-Xavier Lejeune
,
Lilia Mesrob
,
Frédéric Parmentier
,
Cedric Bicep
,
Rafael Vazquez-Manrique
,
et al.
Journal articles
inserm-00690001v1
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A convex formulation for joint RNA isoform detection and quantification from multiple RNA-seq samples
Elsa Bernard
,
Laurent Jacob
,
Julien Mairal
,
Eric Viara
,
Jean-Philippe Vert
Journal articles
hal-01123141v3
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Efficient RNA Isoform Identification and Quantification from RNA-Seq Data with Network Flows
Elsa Bernard
,
Laurent Jacob
,
Julien Mairal
,
Jean-Philippe Vert
Journal articles
hal-00803134v3
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Machine learning for in silico virtual screening and chemical genomics: new strategies.
Jean-Philippe Vert
,
Laurent Jacob
Combinatorial Chemistry and High Throughput Screening, 2008, 11 (8), pp.677-85
Journal articles
hal-00433569v1
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Clustered Multi-Task Learning: A Convex Formulation
Laurent Jacob
,
Francis Bach
,
Jean-Philippe Vert
2008
Preprints, Working Papers, ...
hal-00320573v1
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Reverse-Complement Equivariant Networks for DNA Sequences
Vincent Mallet
,
Jean-Philippe Vert
2022
Preprints, Working Papers, ...
hal-03510326v1
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Phi-score: A cell-to-cell phenotypic scoring method for sensitive and selective hit discovery in cell-based assays
Laurent Guyon
,
Christian Lajaunie
,
Frédéric Fer
,
Ricky Bhajun
,
Eric Sulpice
,
et al.
Journal articles
hal-01246683v1
|
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The Kendall and Mallows Kernels for Permutations
Yunlong Jiao
,
Jean-Philippe Vert
2016
Preprints, Working Papers, ...
hal-01279273v2
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Inference of genome 3D architecture by modeling overdispersion of Hi-C data
Nelle Varoquaux
,
William Noble
,
Jean-Philippe Vert
2021
Preprints, Working Papers, ...
hal-03375900v1
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Changes in gene expression control by DNA methylation in cancer
Matahi Moarii
,
Valentina Boeva
,
Jean-Philippe Vert
,
Fabien Reyal
Journal articles
hal-01246674v1
|
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Multiple dimensions of epigenetic gene regulation in the malaria parasite Plasmodium falciparum
Ferhat Ay
,
Evelien M. Bunnik
,
Nelle Varoquaux
,
Jean-Philippe Vert
,
William Stafford Noble
,
et al.
Journal articles
hal-01246696v1
|
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