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Transcriptome analysis of wood formation in maritime pine

Frigerio Cantón , Grégoire G. Le Provost , V. Garcia , A. Barre , Jean-Marc Frigerio et al.
Sustainable Forestry, Wood products and Biotechnology, BIOFOR 02, Nov 2002, Vitoria-Gasteiz, Spain
Conference papers hal-02762876v1
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E-Biothon : Une plate-forme pour accélérer les recherches en biologie, santé et environnement

Nicolas Bard , Sylvie Boin , François Bothorel , Philippe Chaumeil , Philippe Collinet et al.
Journées SUCCES 2013, Groupe d'Interet Scientifique (GIS). FRA., Nov 2013, Paris, France
Conference papers hal-00927495v1

Molecular and phenotypic profiling from the base to the crown in maritime pine wood-forming tissue

Jorge Almiro Paiva , Marcelo Arnoldo Garces , A. Alves , Pauline Garnier‐géré , J.C. Rodrigues et al.
New Phytologist, 2008, 178 (2), pp.283-301. ⟨10.1111/j.1469-8137.2008.02379.x⟩
Journal articles hal-02655721v1

Development of a bac library and bac end sequencing for pedunculate oak (Quercus robur L.) : new tools for oak genome studies

Patricia P. Faivre-Rampant , Frederique Bitton , Clément Boussardon , Catherine Bodenes-Brezard , Emilie E. Chancerel et al.
Conference on Forest Ecosystem Genomics and Adaptation, Jun 2010, Madrid, Spain
Conference papers hal-02753048v1

Bioinformatic analysis of Sanger and 454 ESTs in oak

Saneyoshi S. Ueno , Grégoire G. Le Provost , Valérie V. Léger , Christophe C. Klopp , Celine C. Noirot et al.
Conference on Forest Ecosystem Genomics and Adaptation, Jun 2010, Madrid, Spain. pp.73
Conference papers hal-00964385v1
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Development and implementation of a highly-multiplexed SNP array for genetic mapping in maritime pine and comparative mapping with loblolly pine

Emilie E. Chancerel , Camille Lepoittevin , Grégoire G. Le Provost , Yao-Cheng Lin , Juan Pablo Jaramillo-Correa et al.
BMC Genomics, 2011, 12, 14 p. ⟨10.1186/1471-2164-12-368⟩
Journal articles hal-02649406v1
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A pipeline for automatic taxonomic community inventories on data from NGS : an example with freshwater diatoms

Lenaïg L. Kermarrec , Philippe P. Chaumeil , Frédéric F. Rimet , Jean-Marc Frigerio , Valerie Laval et al.
4th International Barcode of Life Conference, University of Adelaide. Adélaide, AUS., Nov 2011, Adélaide, Australia. 1p
Conference papers hal-00999998v1

Selective pressures between oaks and their obligate fungal parasite causing powdery mildew

Marie Laure M. L. Desprez Loustau , Thibaut Decourcelle , Sylvain S. Delzon , Christian Cyril Dutech , Nicolas Feau et al.
Conference on Forest Ecosystem Genomics and Adaptation, Jun 2010, Madrid, Spain
Conference papers hal-02755832v1

Analysis of expressed sequence tags in maritime pine (Pinus pinaster Aiton)

Grégoire G. Le Provost , Jean-Marc Frigerio , Philippe Chaumeil , Saneyoshi Ueno , Camille Lepoittevin et al.
Conference on Forest Ecosystem Genomics and Adaptation, Jun 2010, Madrid, Spain
Conference papers hal-02758480v1

Cross-species transferability and mapping of genomic and cDNA SSRs in pines

David Chagné , Philippe Chaumeil , Agnes Ramboer , Carmen Collada , Antonio Guevara et al.
TAG Theoretical and Applied Genetics, 2004, 19 (6), pp.1204-1214. ⟨10.1007/s00122-004-1683-z⟩
Journal articles istex hal-02681281v1

A next-generation sequencing approach to river biomonitoring using benthic diatoms

Lenaïg Kermarrec , Alain Franc , Frédéric Rimet , Philippe Chaumeil , Jean-Marc Frigerio et al.
Freshwater Science, 2014, 33 (1), pp.349-363. ⟨10.1086/675079⟩
Journal articles hal-02632667v1

A pipeline for molecular taxonomy

Alain Franc , Melanie Roy , Philippe Chaumeil , Jean-Marc Frigerio
Conference on Forest Ecosystem Genomics and Adaptation, Jun 2010, Madrid, Spain
Conference papers hal-02751216v1

The proteome of maritime pine wood forming tissue

Jean-Marc J.-M. Gion , Céline C. Lalanne , Grégoire G. Le Provost , Hélène Ferry-Dumazet , Jorge Almiro Paiva et al.
Proteomics, 2005, 5 (14), pp.3731-3751. ⟨10.1002/pmic.200401197⟩
Journal articles istex hal-02678286v1

In silico screening of conserved orthologous sequences(COS) from Fagaceae ESTs resources

Yao-Cheng Lin , Saneyoshi Ueno , Jean-Marc Frigerio , Cyril Cabane , Catherine Bodenes-Brezard Bodénès et al.
Conference on Forest Ecosystem Genomics and Adaptation, Jun 2010, Madrid, Spain
Conference papers hal-02755595v1
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Task-based randomized singular value decomposition and multidimensional scaling

Emmanuel Agullo , Olivier Coulaud , Alexandre Denis , Mathieu Faverge , Alain Franc et al.
[Research Report] RR-9482, Inria Bordeaux - Sud Ouest; Inrae - BioGeCo. 2022, pp.37
Reports hal-03773985v2

Proteomics for genetic and physiological studies in forest trees : application in Maritime Pine

Christophe Plomion , Nasser N. Bahrman , Paulo Costa , Christian C. Dubos , Jean-Marc Frigerio et al.
Molecular genetics and breeding of forest trees, Haworth press, 2004, 978-1-56022-958-0 978-1-56022-959-9
Book sections hal-02827253v1

Using transcriptome analysis to identify osmotic stress candidate genes in maritime pine (Pinus pinaster Ait.)

Jean-Marc Frigerio , Christian Dubos , Philippe Chaumeil , Franck F. Salin , V. Garcia et al.
Sustainable Forestry, Wood products and Biotechnology, BIOFOR 02, Nov 2002, Vitoria-Gasteiz, Spain
Conference papers hal-02764394v1
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metaMatch: un algorithme pour l'assignation taxonomique en métagénomique

Jean-Marc Frigerio , Philippe Chaumeil , Pierre Gay , Lenaïg Kermarrec , Frédéric Rimet et al.
journées scientifiques mésocentres et France Grilles 2012, Oct 2012, Paris, France
Conference papers hal-00766072v1

Imprints of natural selection along environmental gradients in phenology-related genes of Quercus petraea

Florian Alberto , Jérémy Derory , Christophe C. Boury , Jean-Marc Frigerio , Niklaus E. Zimmermann et al.
Genetics, 2013, 195 (2), pp.495-512. ⟨10.1534/genetics.113.153783⟩
Journal articles hal-02649035v1

Genome scanning of regions showing divergent evolution between white oaks (Quercus petraea (matt.) Liebl. and Q.robur l.) : new insights from the oak allelic resequencing project

Pauline Garnier‐géré , Tiange Lang , Pierre P. Abadie , Thibaut Decourcelle , Valérie V. Léger et al.
Conference on Forest Ecosystem Genomics and Adaptation, Jun 2010, Madrid, Spain
Conference papers hal-02753045v1
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Chloroplast DNA variation in a hyperdiverse tropical tree community

Henri Caron , Jean‐françois Molino , Daniel Sabatier , Patrick Léger , Philippe Chaumeil et al.
Ecology and Evolution, 2019, 9 (8), pp.4897-4905. ⟨10.1002/ece3.5096⟩
Journal articles hal-02108230v1

Diatom DNA metabarcoding for ecological assessment: Comparison among bioinformatics pipelines used in six European countries reveals the need for standardization

Bonnie Bailet , Laure Apothéloz-Perret-Gentil , Ana Baričević , Teofana Chonova , Alain Franc et al.
Science of the Total Environment, 2020, 745, pp.140948. ⟨10.1016/j.scitotenv.2020.140948⟩
Journal articles hal-03152486v1
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A geometric view of Biodiversity: scaling to metagenomics

Pierre Blanchard , Philippe Chaumeil , Jean-Marc Frigerio , Frédéric Rimet , Franck Salin et al.
[Research Report] RR-9144, INRIA; INRA. 2018, pp.1-16
Reports hal-01685711v2

Automated SNP detection in expressed sequence tags : statistical considerations and application to maritime pine sequences

Loick Le Dantec , David Chagné , David Pot , Olivier Cantin , Pauline Garnier‐géré et al.
Plant Molecular Biology, 2004, 54 (3), pp.461-470. ⟨10.1023/B:PLAN.0000036376.11710.6f⟩
Journal articles istex hal-02679200v1

Gaps to fill when analyzing freshwater diatom diversity with DNA barcoding – notes from a boreal region

Maria Kahlert , Agnes Bouchez , Philippe Chaumeil , Alain Franc , Jean-Marc Frigerio et al.
6. European Phycological Congress, Aug 2015, Londres, United Kingdom. ⟨10.1080/09670262.2015.1069489⟩
Conference papers hal-02743082v1
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In vitro vs in silico detected SNPs for the development of a genotyping array : what can we learn from a non-model species?

Camille Lepoittevin , Jean-Marc Frigerio , Pauline Garnier‐géré , Franck F. Salin , María-Teresa Cervera et al.
PLoS ONE, 2010, 5 (6), 9 p. ⟨10.1371/journal.pone.0011034⟩
Journal articles hal-02662512v1