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Analysis of BAC end sequences in oak, a keystone forest tree species, providing insight into the composition of its genome

Patricia P. Faivre-Rampant , Isabelle Lesur , Clément Boussardon , Frederique Bitton , Marie-Laure Martin-Magniette et al.
BMC Genomics, 2011, 12, 13 p. ⟨10.1186/1471-2164-12-292⟩
Journal articles hal-02646702v1

Development of high density linkage maps in European oak for multi-objective genetic applications

Catherine Bodenes-Brezard Bodénès , Emilie E. Chancerel , Camille Lepoittevin , François Ehrenmann , Isabelle Lesur Kupin Lesur et al.
IUFRO working group “Genetics of Quercus and Nothofagus”, Institut National de Recherche Agronomique (INRA). UMR Biodiversité, Gènes et Communautés (1202)., Oct 2012, Bordeaux, France. 1 p
Conference papers hal-02805716v1

The use and domestication of Theobroma cacao during the mid-Holocene in the upper Amazon

Sonia Zarrillo , Nilesh Gaikwad , Claire Lanaud , Terry Powis , Christopher Viot et al.
Nature Ecology & Evolution, 2018, 2 (12), pp.1879-1888. ⟨10.1038/s41559-018-0697-x⟩
Journal articles hal-02625809v1
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Linkage and association mapping for two major traits used in the maritime pine breeding program: height growth and stem straightness.

Jérôme Bartholome , Marco Cam Bink , Joost van Heerwaarden , Emilie Chancerel , Christophe Boury et al.
PLoS ONE, 2016, 11 (11), 21 p. ⟨10.1371/journal.pone.0165323⟩
Journal articles hal-02636715v1

De novo assembly of maritime pine transcriptome: implications for forest breeding and biotechnology

Javier Canales , Rocío Bautista , Philippe Label , Josefa Gómez-Maldonado , Isabelle Lesur Kupin Lesur et al.
Plant Biotechnology Journal, 2014, 12 (3), pp.286-299. ⟨10.1111/pbi.12136⟩
Journal articles hal-02640932v1
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High-density linkage mapping in a pine tree reveals a genomic region associated with inbreeding depression and provides clues to the extent and distribution of meiotic recombination

Emilie E. Chancerel , Jean-Baptiste J.-B. Lamy , Isabelle Lesur Kupin Lesur , Celine C. Noirot , Christophe C. Klopp et al.
BMC Biology, 2013, 11, 19 p. ⟨10.1186/1741-7007-11-50⟩
Journal articles hal-00964786v1

Oak genome sequencing and evolution

Jerome J. Salse , Jean Marc Aury , Florent Murat , Sébastien Faye , Karine Labadie et al.
Genomics and Forest Tree Genetics Conference, Institut National de Recherche Agronomique (INRA). UMR Biodiversité, Gènes et Communautés (1202)., May 2016, Arcachon, France. 134 p
Conference papers hal-02741698v1

Discovering genes involved in ecological speciation in European white oaks using an RNAseq approach

Grégoire G. Le Provost , Isabelle Lesur Kupin Lesur , Céline C. Lalanne , Karine Labadie , Jean Marc Aury et al.
Genomics and Forest Tree Genetics Conference, Institut National de Recherche Agronomique (INRA). UMR Biodiversité, Gènes et Communautés (1202)., May 2016, Arcachon, France. 134 p
Conference papers hal-02741267v1

Genetic analysis of oleoresin terpenoid content in maritime pine

Jérôme Bartholomé , Marina de Vega , Isabelle Lesur Kupin Lesur , Franck F. Salin , Emilie E. Chancerel et al.
Genomics and Forest Tree Genetics Conference, May 2016, Arcachon, France. , 134 p., 2016, Book of abstracts
Poster communications hal-02741247v1
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Influence of landscape structure and cropping system on microbial diversity and microbial interactions in vineyards

Corinne Vacher , Charlie Pauvert , Thomas Fort , Marc Buee , Valerie Laval et al.
Séminaire Pôle de Protection des Plantes (CIRAD 3P), Nov 2018, St-Pierre de la Réunion, France
Conference papers hal-02787591v1

Genome evolution in yeasts.

Bernard Dujon , David Sherman , Gilles Fischer , Pascal Durrens , Serge Casaregola et al.
Nature, 2004, 430 (6995), pp.35-44. ⟨10.1038/nature02579⟩
Journal articles istex hal-00104411v1
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How does contemporary selection shape oak phenotypes?

Hermine Alexandre , Laura Truffaut , Etienne Klein , Alexis A. Ducousso , Emilie Chancerel et al.
Evolutionary Applications, In press, pp.1-19. ⟨10.1111/eva.13082⟩
Journal articles hal-02927318v1

A sample view of the pedunculate oak (Quercus robur) genome from the sequencing of hypomethylated and random genomic libraries

Isabelle Lesur , Jérôme J. Durand , Federico Sebastiani , Niclas Gyllenstrand , Catherine Bodenes-Brezard Bodénès et al.
Tree Genetics and Genomes, 2011, 7 (6), pp.1277-1285. ⟨10.1007/s11295-011-0412-4⟩
Journal articles istex hal-02644223v1

Sequencing and analysis of the oak transcriptome using RNA-seq technologies

Isabelle Lesur Kupin Lesur , Grégoire G. Le Provost , Céline C. Lalanne , François Ehrenmann , Céline Noirot et al.
IUFRO working group “Genetics of Quercus and Nothofagus”, Institut National de Recherche Agronomique (INRA). UMR Biodiversité, Gènes et Communautés (1202)., Oct 2012, Bordeaux, France. 1 p
Conference papers hal-02806071v1
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The genetics of water‐use efficiency in maritime pine and its relation to growth

Elisa E. Marguerit , Laurent Bouffier , Emilie E. Chancerel , Christophe C. Boury , P. Costa et al.
Final Conference Noveltree "Tree Breeding, Genomics and Evolutionary Biology: New synergies to tackle the impact of climate change in the 21st century", Oct 2012, Helsinki, Finland. 69 p
Conference papers hal-02749305v1

High-density SNP assay development for genetic analysis in maritime pine (Pinus pinaster)

Christophe Plomion , Jérôme Bartholomé , Isabelle Lesur Kupin Lesur , Christophe C. Boury , Isabel Rodríguez-Quilón et al.
Molecular Ecology Resources, 2016, 16 (2), pp.574-587. ⟨10.1111/1755-0998.12464⟩
Journal articles istex hal-02640393v1

De novo assembly of Fagus sylvatica transcriptome based on Sanger and 454 ESTs: application in transcriptome-scale analysis of bud phenology and markers development

Isabelle Lesur Kupin Lesur , Grégoire G. Le Provost , Céline C. Lalanne , François Ehrenman , Céline Noirot et al.
IUFRO working group “Genetics of Quercus and Nothofagus”, Oct 2012, Bordeaux, France. 1 p., 2012
Poster communications hal-02802761v1

Decoding the oak genome: public release of sequence data, assembly, annotation and publication strategies.

Christophe Plomion , Jean-Marc Aury , Joëlle Amselem , Tina Alaeitabar , Valérie Barbe et al.
Molecular Ecology Resources, 2015, 16 (1), pp.254-265. ⟨10.1111/1755-0998.12425⟩
Journal articles istex hal-01579667v1

A unigene set for European beech (Fagus sylvatica L.) and its use to decipher the molecular mechanisms involved in dormancy regulation

Isabelle Lesur Kupin Lesur , Alison Bechade , Céline C. Lalanne , Christophe C. Klopp , Céline Noirot et al.
Molecular Ecology Resources, 2015, 15 (5), pp.1192-1204. ⟨10.1111/1755-0998.12373⟩
Journal articles istex hal-02640346v1
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“PLANT-KBBE SUSTAINPINE” Genomic tools in maritime Pine for enhanced biomass production and sustainable forest management

Andrea Rupps , Kurt Zoglauer , Vornam Barbara , Reiner Finkeldey , María-Teresa Cervera et al.
PLANT 2030 Status Seminar 2013, Mar 2013, Potsdam, Germany. , 2013
Poster communications hal-02808492v1
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An integrated information system dedicated to oak genomics and genetics

Joëlle Amselem , Nicolas Francillonne , Célia Michotey , Thomas Letellier , Jean-Marc Aury et al.
PAG XXVI Plant and Animal Genome Conference, Jan 2018, San Diego, United States. pp.27 slides
Conference papers hal-01839185v1
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The oak gene expression atlas: insights into Fagaceae genome evolution and the discovery of genes regulated during bud dormancy release

Isabelle Lesur , Grégoire G. Le Provost , Pascal Bento , Corinne da Silva , Jean-Charles Leplé et al.
BMC Genomics, 2015, 16 (1), pp.112. ⟨10.1186/s12864-015-1331-9⟩
Journal articles hal-02285504v1
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Development of target sequence capture and estimation of genomic relatedness in a mixed oak stand

Isabelle Lesur Kupin , Hermine Alexandre , Christophe Boury , Emilie Chancerel , Christophe Plomion et al.
Frontiers in Plant Science, 2018, 9, pp.1-16. ⟨10.3389/fpls.2018.00996⟩
Journal articles hal-02628743v1
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Bioinformatics matters: The accuracy of plant and soil fungal community data is highly dependent on the metabarcoding pipeline

Charlie Pauvert , Marc Buee , Valerie Laval , Veronique Edel-Hermann , Laure Fauchery et al.
Fungal Ecology, 2019, 41, pp.23 - 33. ⟨10.1016/j.funeco.2019.03.005⟩
Journal articles hal-02627344v1

Implication of the suberin pathway in adaptation to waterlogging and hypertrophied lenticels formation in pedunculate oak (Quercus robur L.)

Grégoire Le Provost , Isabelle Lesur Kupin , Céline Lalanne , Corinne da Silva , Karine Labadie et al.
Tree Physiology, 2016, 36 (11), pp.1330-1342. ⟨10.1093/treephys/tpw056⟩
Journal articles hal-01602423v1

Genomic landscape of the global oak phylogeny

Andrew Hipp , Paul Manos , Marlene Hahn , Michael Avishai , Catherine Bodénès et al.
New Phytologist, 2020, 226 (4), pp.1198-1212. ⟨10.1111/nph.16162⟩
Journal articles hal-03162542v1

Genomic resources notes accepted 1 August 2015 - 31 September 2015

. Genomic Resources Development Consortium , Annegret Kohler , Antoine Kremer , Grégoire G. Le Provost , Isabelle Lesur Kupin Lesur et al.
Molecular Ecology Resources, 2016, 16 (1), pp.377-377. ⟨10.1111/1755-0998.12482⟩
Journal articles istex hal-02630738v1
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Genome-wide evolutionary response of European oaks since the Little Ice Age

Dounia Saleh , Jun Chen , Jean-Charles Leplé , Thibault Leroy , Laura Truffaut et al.
2021
Preprints, Working Papers, ... hal-03275582v1
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Genome-wide distribution of genetic diversity and linkage disequilibrium in a mass-selected population of maritime pine

Christophe Plomion , Emilie E. Chancerel , Jeffrey Endelman , Jean-Baptiste J.-B. Lamy , Eric Mandrou et al.
BMC Genomics, 2014, 15, 17 p. ⟨10.1186/1471-2164-15-171⟩
Journal articles hal-02636858v1
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Genetic analysis of oleoresin terpenoid content in maritime pines

Jérôme Bartholomé , Marina de Vega , Isabelle Lesur Kupin Lesur , Franck F. Salin , Emilie E. Chancerel et al.
Genomics and Forest Tree Genetics Conference, May 2016, Arcachon, France. , 2016, Abstract Book
Poster communications hal-02743607v1