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Mutations in ACTRT1 and its enhancer RNA elements lead to aberrant activation of Hedgehog signaling in inherited and sporadic basal cell carcinomas

Elodie Bal , Hyun-Sook Park , Zakia Belaid-Choucair , Hulya Kayserili , Magali Naville , et al.
Nature Medicine, 2017, 23 (10), pp.1226-1233. ⟨10.1038/nm.4368⟩
Journal articles hal-02415844v1


Olivier Coutard , Pierre-Olivier Amblard , Claude Amra , Brigitte Bacroix , Pascal Barone , et al.
Conférence des Présidents du Comité National, CNRS, 2021, Paris, France
Conference papers hal-03406826v1

Genomicus: five genome browsers for comparative genomics in eukaryota

Alexandra Louis , Matthieu Muffato , Hugues Roest Crollius
Nucleic Acids Research, 2012, 41 (D1), pp.D700-D705. ⟨10.1093/nar/gks1156⟩
Journal articles hal-03352666v1
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A functional operon delineates an extracellular pathway that controls body asymmetry only in animals with a ciliated left-right organizer

Emmanuelle Szenker-Ravi , Tim Ott , Muznah Khatoo , Anne Moreau de Bellaing , Wei Xuan Goh , et al.
Nature Genetics, 2022, 54 (1), pp.62-72. ⟨10.1038/s41588-021-00970-4⟩
Journal articles hal-03876795v1

Master regulators in primary skin fibroblast fate reprogramming in a human ex vivo model of chronic wounds

Maïté Noizet , Emilie Lagoutte , Marlène Gratigny , Marielle Bouschbacher , Isabelle Lazareth , et al.
Wound Repair and Regeneration, 2016, 24 (2), pp.247-262. ⟨10.1111/wrr.12392⟩
Journal articles hal-02415822v1

The loss of adipokine genes in the chicken genome and implications for insulin metabolism

Natasa Dakovic , Morgane Terezol , Frederique Pitel , Virginie Maillard , Sébastien Elis , et al.
Molecular Biology and Evolution, 2014, 31 (10), pp.2637-2646. ⟨10.1093/molbev/msu208⟩
Journal articles hal-01129850v1
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Erratum to :"Understanding Brassicaceae evolution through ancestral genome reconstruction" (vol 16, 262, 2015)

Florent Murat , Alexandra Louis , Florian Maumus , Alix Armero , Richard Cooke , et al.
Genome Biology, 2016, 17 (64), ⟨10.1186/s13059-016-0887-2⟩
Journal articles hal-02630062v1
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GC content shapes mRNA storage and decay in human cells

Maïté Courel , Yves Clément , Clémentine Bossevain , Dominika Foretek , Olivia Vidal Cruchez , et al.
eLife, 2019, 8, pp.e49708. ⟨10.7554/elife.49708⟩
Journal articles hal-03457618v1
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Directed acyclic coloured multigraphs for expert eukaryotic gene annotation

Sarah Djebali , Franck Delaplace , Hugues Roest Crollius
Journée Ouverte Biologie Informatique Mathématiques (JOBIM 2005), 2005, Paris, France
Conference papers hal-00339795v1
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Conserved Small Nucleotidic Elements at the Origin of Concerted piRNA Biogenesis from Genes and lncRNAs

Silke Jensen , Emilie Brasset , Elise Parey , Hugues Roest Crollius , Igor Sharakhov , et al.
Cells, 2020, 9 (6), pp.1491. ⟨10.3390/cells9061491⟩
Journal articles hal-02935810v1

GenomicusPlants: a web resource to study genome evolution in flowering plants

Alexandra Louis , Florent Murat , Jerome Salse , Hugues Roest Crollius
Plant and Cell Physiology, 2015, 56 (1), pp.e4. ⟨10.1093/pcp/pcu177⟩
Journal articles hal-01168460v1

Genomicus 2018: karyotype evolutionary trees and on-the-fly synteny computing

Nga thi thuy Nguyen , Pierre Vincens , Hugues Roest Crollius , Alexandra Louis
Nucleic Acids Research, 2018, 46 (D1), pp.D816-D822. ⟨10.1093/nar/gkx1003⟩
Journal articles hal-02415691v1
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Signaling Switch of the Axon Guidance Receptor Robo3 during Vertebrate Evolution

Pavol Zelina , Heike Blockus , Yvrick Zagar , Amélie Péres , François Friocourt , et al.
Neuron, 2014, 84 (6), pp.1258-1272. ⟨10.1016/j.neuron.2014.11.004⟩
Journal articles hal-01102724v1
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The bowfin genome illuminates the developmental evolution of ray-finned fishes

Andrew W Thompson , M Brent Hawkins , Elise Parey , Dustin J Wcisel , Tatsuya Ota , et al.
Nature Genetics, 2021, 53, pp.1373 - 1384. ⟨10.1038/s41588-021-00914-y⟩
Journal articles hal-03457561v1
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Preventing dangerous nonsense: selection for robustness to transcriptional error in human genes.

Brian P. Cusack , Peter F. Arndt , L. Duret , Hugues Roest Crollius
PLoS Genetics, 2011, 7 (10), pp.e1002276. ⟨10.1371/journal.pgen.1002276⟩
Journal articles inserm-00711772v1

Un cadre pour la combinaison d'heuristiques sur les alignements de séquences pour annoter les gènes.

Sarah Djebali , Franck Delaplace , Hugues Roest Crollius
Acte des journée MATH STIC algortihmiques génomiques, 2005, Orsay, France. pp.6--7
Conference papers hal-00339796v1
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ANISEED 2019: 4D exploration of genetic data for an extended range of tunicates

Justine Dardaillon , Delphine Dauga , Paul Simion , Emmanuel Faure , Takeshi Onuma , et al.
Nucleic Acids Research, 2019, ⟨10.1093/nar/gkz955⟩
Journal articles hal-02415680v1

GENOTROUT - Apport des nouvelles technologies de séquençage (NGS) à l'analyse du génome de la truite arc-en-ciel (2010-2013)

Yann Guiguen , Carine Genet , Edwige Quillet , Mekki Boussaha , Jean-Nicolas Volff , et al.
9. Colloque Agenae/ANR, Mar 2012, La Rochelle, France. pp.18
Conference papers hal-01019800v1

Comparative epigenomics in the Brassicaceae reveals two evolutionarily conserved modes of PRC2-mediated gene regulation

Claudia Chica , Alexandra Louis , Hugues Roest Crollius , Vincent Colot , François Roudier
Genome Biology, 2017, 18 (1), pp.1-15. ⟨10.1186/s13059-017-1333-9⟩
Journal articles hal-02415743v1
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The rainbow trout genome provides novel insights into evolution after whole-genome duplication in vertebrates.

Camille Berthelot , Frédéric Brunet , Domitille Chalopin , Amélie Juanchich , Maria Bernard , et al.
Nature Communications, 2014, 5, pp.1-10. ⟨10.1038/ncomms4657⟩
Journal articles hal-01193812v1
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Early born neurons are abnormally positioned in the doublecortin knockout hippocampus

Reham Khalaf-Nazzal , Melissa A. Stouffer , Robert Olaso , Leila Muresan , Audrey Roumegous , et al.
Human Molecular Genetics, 2017, 26 (1), pp.90-108. ⟨10.1093/hmg/ddw370⟩
Journal articles hal-01512718v1
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Genome structures resolve the early diversification of teleost fishes

Elise Parey , Alexandra Louis , Jérôme Montfort , Olivier Bouchez , Céline Roques , et al.
Preprints, Working Papers, ... hal-03765882v1

GC content shapes mRNA storage and decay in human cells

Maïté Courel , Yves Clément , Clémentine Bossevain , Dominika Foretek , Olivia Vidal Cruchez , et al.
eLife, 2019
Journal articles hal-03023372v1

Genomicus update 2015: KaryoView and MatrixView provide a genome-wide perspective to multispecies comparative genomics

Alexandra Louis , Nga thi thuy Nguyen , Matthieu Muffato , Hugues Roest crollius
Nucleic Acids Research, 2015, 43 (D1), pp.D682-D689. ⟨10.1093/nar/gku1112⟩
Journal articles hal-03352660v1

Chromosome evolution at the origin of the ancestral vertebrate genome

Christine Sacerdot , Alexandra Louis , Céline Bon , Camille Berthelot , Hugues Roest Crollius
Genome Biology, 2018, 19 (1), ⟨10.1186/s13059-018-1559-1⟩
Journal articles hal-02415626v1

Identification and functional modelling of plausibly causative cis-regulatory variants in a highly-selected cohort with X-linked intellectual disability

Hemant Bengani , Detelina Grozeva , Lambert Moyon , Shipra Bhatia , Susana Louros , et al.
PLoS ONE, 2021, 16 (8), pp.e0256181. ⟨10.1371/journal.pone.0256181⟩
Journal articles hal-03455904v1
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On the importance of evolutionary constraint for regulatory sequence identification

François Giudicelli , Hugues Roest Crollius
Briefings in Functional Genomics and Proteomics, 2021, 20 (6), pp.361-369. ⟨10.1093/bfgp/elab015⟩
Journal articles hal-03457553v1

The bowfin genome illuminates the developmental evolution of ray-finned fishes

Andrew Thompson , M. Brent Hawkins , Elise Parey , Dustin Wcisel , Tatsuya Ota , et al.
Nature Genetics, 2021, ⟨10.1038/s41588-021-00914-y⟩
Journal articles hal-03329977v1
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Amphioxus functional genomics and the origins of vertebrate gene regulation

Ferdinand Marletaz , Panos N. Firbas , Ignacio Maeso , Juan J. Tena , Ozren Bogdanovic , et al.
Nature, 2018, 564 (7734), pp.64-70. ⟨10.1038/s41586-018-0734-6⟩
Journal articles hal-02000511v1

Reconstruction of hundreds of reference ancestral genomes across the eukaryotic kingdom

Matthieu Muffato , Alexandra Louis , Nga Thi Thuy Nguyen , Joseph Lucas , Camille Berthelot , et al.
Preprints, Working Papers, ... hal-03765869v1