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Estimating probabilistic context-free grammars for proteins using contact map constraints

Witold Dyrka , Mateusz Pyzik , François Coste , Hugo Talibart
PeerJ, 2019, 7, pp.1-35. ⟨10.7717/peerj.6559⟩
Journal articles hal-02400871v1
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PPalign: optimal alignment of Potts models representing proteins with direct coupling information

Hugo Talibart , François Coste
BMC Bioinformatics, 2021, 22 (317), pp.1-22. ⟨10.1186/s12859-021-04222-4⟩
Journal articles hal-03264248v2
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ComPotts: Optimal alignment of coevolutionary models for protein sequences

Hugo Talibart , François Coste
JOBIM 2020 - Journées Ouvertes Biologie, Informatique et Mathématiques, Jun 2020, Montpellier, France. pp.1-8
Conference papers hal-02862213v1
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Using residues coevolution to search for protein homologs through alignment of Potts models

Hugo Talibart , François Coste
JOBIM 2019 - Journées Ouvertes Biologie, Informatique et Mathématiques, Jul 2019, Nantes, France. pp.1
Poster communications hal-02402687v1

Where the context-free grammar meets the contact map: a probabilistic model of protein sequences aware of contacts between amino acids

Witold Dyrka , François Coste , Hugo Talibart
ISMB 2018 - 3DSIG: Structural Bioinformatics and Computational Biophysics, Jul 2018, Chicago, United States
Conference papers hal-01939021v1
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Using residues coevolution to search for protein homologs through alignment of Potts models

Hugo Talibart , François Coste
CECAM 2019 - workshop on Co-evolutionary methods for the prediction and design of protein structure and interactions, CECAM-HQ-EPFL, Jun 2019, Lausanne, Switzerland. pp.1-2
Conference papers hal-02402646v1
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PPalign: optimal alignment of Potts models representing proteins with direct coupling information

Hugo Talibart , François Coste , Mathilde Carpentier
ISMB 2022 - 30th Conference on Intelligent Systems for Molecular Biology, Jul 2022, Madison, United States. pp.1-1
Poster communications hal-03926272v1