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Mesh Optimization

Guillaume Cerutti
Computer graphics. France. 2015
Photos medihal-01100828v1
Image document

Meshing Meristems - An Iterative Mesh Optimization Method for Modeling Plant Tissue at Cell Resolution

Guillaume Cerutti , Christophe Godin
BIOIMAGING, Jan 2015, Lisbonne, Portugal
Conference papers hal-01100808v1
Image document

Curvature-Scale-based Contour Understanding for Leaf Margin Shape Recognition and Species Identification

Guillaume Cerutti , Laure Tougne , Didier Coquin , Antoine Vacavant
International Conference on Computer Vision Theory and Applications (VISAPP), Feb 2013, Barcelona, Spain. pp.277-284
Conference papers hal-00872870v1
Image document

A Model-Based Approach for Compound Leaves Understanding and Identification

Guillaume Cerutti , Laure Tougne , Julien Mille , Antoine Vacavant , Didier Coquin et al.
International Conference on Image Processing (ICIP), Sep 2013, Melbourne, Australia. pp.1471-1475
Conference papers hal-00872889v1

Treex : a Python package for manipulating rooted trees

Romain Azaïs , Guillaume Cerutti , Didier Gemmerlé , Florian Ingels
Journal of Open Source Software, 2019, 4 (38), pp.1-2. ⟨10.21105/joss.01351⟩
Journal articles hal-02164364v1

Leaf margins as sequences: A structural approach to leaf identification

Guillaume Cerutti , Laure Tougne , Didier Coquin , Antoine Vacavant
Pattern Recognition Letters, 2014, 49 (2014), pp.177-184. ⟨10.1016/j.patrec.2014.07.016⟩
Journal articles hal-01095539v1
Image document

A Parametric Active Polygon for Leaf Segmentation and Shape Estimation

Guillaume Cerutti , Laure Tougne , Antoine Vacavant , Didier Coquin
7th International Symposium on Visual Computing, Sep 2011, Las Vegas, United States. pp.202-213
Conference papers hal-00622269v1

Bark Recognition to Improve Leaf-based Classification in Didactic Tree Species Identification

Sarah Bertrand , Guillaume Cerutti , Laure Tougne
VISAPP 2017 - 12th International Conference on Computer Vision Theory and Applications, Feb 2017, Porto, Portugal
Conference papers hal-01486591v1

Comparative Study of Segmentation Methods for Tree Leaves Extraction

Manuel Grand-Brochier , Antoine Vacavant , Guillaume Cerutti , Kevin Bianchi , Laure Tougne et al.
ACM ICVS, Workshop VIGTA (International Workshop on Video and Image Ground Truth in computer vision Applications), Jul 2013, St Petersbourg, Russia. pp.1-10, ⟨10.1145/2501105.2501109⟩
Conference papers hal-01339221v1

Segmentation Algorithm on Smartphone Dual Camera: Application to Plant Organs in the Wild

Sarah Bertrand , Guillaume Cerutti , Laure Tougne
10th International Conference on Machine Vision, Nov 2017, Vienna, Austria. ⟨10.1117/12.2314731⟩
Conference papers hal-01675655v1
Image document

Tree leaves extraction in natural images: Comparative study of pre-processing tools and segmentation methods

Manuel Grand-Brochier , Antoine Vacavant , Guillaume Cerutti , Camille Kurtz , Jonathan Weber et al.
IEEE Transactions on Image Processing, 2015, 24 (5), pp.1549-1560. ⟨10.1109/TIP.2015.2400214⟩
Journal articles hal-01176699v1

About the Impact of Pre-processing Tools on Segmentation Methods, Applied for Tree Leaves Extraction

Manuel Grand-Brochier , Antoine Vacavant , Robin Strand , Guillaume Cerutti , Laure Tougne et al.
9th International Conference on Computer Vision Theory and Applications (VISAPP), Jan 2014, Lisbon, Portugal. pp.1-10
Conference papers hal-01270783v1

Projet ReVeS : Reconnaissance de Végétaux pour de interfaces Smartphones

Laure Tougne , Guillaume Cerutti , Antoine Vacavant , Julien Mille , Violaine Antoine et al.
8èmes journées francophones Mobilité et Ubiquité (UBIMOB), Jun 2012, Anglet, France. pp.49-54
Conference papers hal-00760026v1
Image document

Visualization of Leaf Botanical Features Extracted from AlexNet Convolutional Layers

Sarah Bertrand , Guillaume Cerutti , Laure Tougne
IAMPS - International Workshop on Image Analysis Methods for the Plant Sciences 2018, Jan 2018, Nottingham, United Kingdom
Poster communications hal-01691924v1

Segmentation et interprétation d'images naturelles pour l'identification de feuilles d'arbres sur smartphone

Guillaume Cerutti
2013
Preprints, Working Papers, ... hal-01461461v1
Image document

DRACO-STEM: An Automatic Tool to Generate High-Quality 3D Meshes of Shoot Apical Meristem Tissue at Cell Resolution

Guillaume Cerutti , Olivier Ali , Christophe Godin
Frontiers in Plant Science, 2017, 8, pp.353. ⟨10.3389/fpls.2017.00353⟩
Journal articles hal-01573521v1
Image document

Guiding Active Contours for Tree Leaf Segmentation and Identification

Guillaume Cerutti , Laure Tougne , Julien Mille , Antoine Vacavant , Didier Coquin et al.
CLEF 2011, Conference on Multilingual and Multimodal Information Access Evaluation, Sep 2011, Amsterdam, Netherlands. pp.1
Conference papers hal-00622274v1
Image document

Temporal integration of auxin information for the regulation of patterning

Carlos Galvan-Ampudia , Guillaume Cerutti , Jonathan Legrand , Geraldine Brunoud , Raquel Martin Arevalillo et al.
Journal articles hal-02368529v1

Benchmarking of deep learning algorithms for 3D instance segmentation of confocal image datasets

Anuradha Kar , Manuel Petit , Yassin Refahi , Guillaume Cerutti , Christophe Godin et al.
PLoS Computational Biology, 2022, 18 (4), pp.e1009879. ⟨10.1371/journal.pcbi.1009879⟩
Journal articles hal-03659219v1
Image document

Understanding Leaves in Natural Images - A Model-Based Approach for Tree Species Identification

Guillaume Cerutti , Laure Tougne , Julien Mille , Antoine Vacavant , Didier Coquin et al.
Computer Vision and Image Understanding, 2013, 117 (10), pp.1482-1501. ⟨10.1016/j.cviu.2013.07.003⟩
Journal articles hal-00872878v1
Image document

An image analysis pipeline to quantify emerging cracks in materials or adhesion defects in living tissues

Stéphane Verger , Guillaume Cerutti , Olivier Hamant
Bio-protocol , 2018, 8 (19), pp.1-16. ⟨10.21769/BioProtoc.3036⟩
Journal articles hal-02171434v1

A quantitative gibberellin signalling biosensor reveals a role for gibberellins in internode specification at the shoot apical meristem

Teva Vernoux , Bihai Shi , Amelia Felipo-Benavent , Guillaume Cerutti , Carlos Galvan-Ampudia et al.
2021
Preprints, Working Papers, ... hal-03393660v1
Image document

Late Information Fusion for Multi-modality Plant Species Identification

Guillaume Cerutti , Laure Tougne , Céline Sacca , Thierry Joliveau , Pierre-Olivier Mazagol et al.
Conference and Labs of the Evaluation Forum, Sep 2013, Valencia, Spain. pp.Working Notes
Conference papers hal-00872903v1
Image document

3D Tessellation of Plant Tissue A dual optimization approach to cell-level meristem reconstruction from microscopy images

Guillaume Cerutti , Sophie Ribes , Christophe Godin , Carlos Galvan Ampudia , Teva Vernoux et al.
International Conference on 3D Vision, Oct 2015, Lyon, France. pp.9, ⟨10.1109/3DV.2015.57⟩
Conference papers hal-01246580v1
Image document

From spatio-temporal morphogenetic gradients to rhythmic patterning at the shoot apex

Carlos Galvan-Ampudia , Guillaume Cerutti , Jonathan Legrand , Romain Azaïs , Geraldine Brunoud et al.
2018
Preprints, Working Papers, ... hal-01937928v1
Image document

Revisiting PIN1 polarity interpretation at the SAM based on automated multi-level reconstruction of PIN1 polarities from confocal images

Landry Duguet , Guillaume Cerutti , Carlos Galvan-Ampudia , Etienne Farcot , Teva Vernoux et al.
From genes to plant architecture: the shoot apical meristem in all its states, Nov 2022, Poitiers, France
Poster communications hal-03896961v1
Image document

A parametric active 4D model for the automatic construction of developmental atlases from confocal images of shoot apical meristems

Guillaume Cerutti , Carlos Galvan-Ampudia , Jonathan Legrand , Teva Vernoux , Christophe Godin et al.
IAMPS - International Workshop on Image Analysis Methods for the Plant Sciences 2018, Jan 2018, Nottingham, United Kingdom. 2018
Poster communications hal-01692584v1

Projet de modèle cellulaire 3D de cambium pour étudier l'influence du stress mécanique

Félix Hartmann , Christophe Godin , Guillaume Cerutti , Bruno Moulia , Eric Badel et al.
Xylogénèse sous contraintes environnementales multiples, GDR Sciences du bois; INRAE, Jul 2022, Nancy, France
Conference papers hal-03782696v1
Image document

ReVeS Participation - Tree Species Classification using Random Forests and Botanical Features

Guillaume Cerutti , Violaine Antoine , Laure Tougne , Julien Mille , Lionel Valet et al.
Conference and Labs of the Evaluation Forum (CLEF), Sep 2012, Rome, Italy. pp.1
Conference papers hal-00759848v1
Image document

An Image Analysis Pipeline to Quantify Emerging Cracks in Materials or Adhesion Defects in Living Tissues

Stéphane Verger , Guillaume Cerutti , Olivier Hamant
Bio-protocol , 2018, 8 (19)
Journal articles hal-01940178v1