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Improved large-scale prediction of growth inhibition patterns using the NCI60 cancer cell line panel

Isidro Cortes-Ciriano , Gerard J. P. Van Westen , Guillaume Bouvier , Michael Nilges , John P. Overington , et al.
Bioinformatics, 2016, 32 (1), pp.85-95. ⟨10.1093/bioinformatics/btv529⟩
Journal articles pasteur-01300940v1

Target Engagement and Binding Mode of an Antituberculosis Drug to Its Bacterial Target Deciphered in Whole Living Cells by NMR

Guillaume Bouvier , Catherine Simenel , Jichan Jang , Nitin Kalia , Inhee Choi , et al.
Biochemistry, 2018, 58 (6), pp.526-533. ⟨10.1021/acs.biochem.8b00975⟩
Journal articles hal-02326246v1
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Building Protein Atomic Models from Cryo-EM Density Maps and Residue Co-Evolution

Guillaume Bouvier , Benjamin Bardiaux , Riccardo Pellarin , Chiara Rapisarda , Michael Nilges
Biomolecules, 2022, 12 (9), pp.1290. ⟨10.3390/biom12091290⟩
Journal articles pasteur-03840876v1
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InDeep: 3D fully convolutional neural networks to assist in silico drug design on protein–protein interactions

Vincent Mallet , Luis Checa Ruano , Alexandra Moine Franel , Michael Nilges , Karen Druart , et al.
Bioinformatics, 2021, 38 (5), pp.1261 - 1268. ⟨10.1093/bioinformatics/btab849⟩
Journal articles pasteur-04102799v1

Temperature Accelerated Molecular Dynamics with Soft-Ratcheting Criterion Orients Enhanced Sampling by Low-Resolution Information

Isidro Cortes-Ciriano , Guillaume Bouvier , Michael Nilges , Luca Maragliano , Therese E. Malliavin
Journal of Chemical Theory and Computation, 2015, 11 (7), pp.3446-3454. ⟨10.1021/acs.jctc.5b00153⟩
Journal articles pasteur-01300945v1
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Neisseria meningitidis Type IV Pili Composed of Sequence Invariable Pilins Are Masked by Multisite Glycosylation

Joseph Gault , Mathias Ferber , Silke Machata , Anne-Flore Imhaus , Christian Malosse , et al.
PLoS Pathogens, 2015, 11 (9), ⟨10.1371/journal.ppat.1005162⟩
Journal articles pasteur-01300944v1
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Quantitative Structural Interpretation of Protein Crosslinks

Isaac Filella-Merce , Benjamin Bardiaux , Michael Nilges , Guillaume Bouvier
Structure, 2020, 28 (1), pp.75-82. ⟨10.1016/j.str.2019.10.018⟩
Journal articles pasteur-02369173v1
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quicksom: Self-Organizing Maps on GPUs for clustering of molecular dynamics trajectories

Vincent Mallet , Michael Nilges , Guillaume Bouvier
Bioinformatics, 2021, 37 (14), pp.2064-2065. ⟨10.1093/bioinformatics/btaa925⟩
Journal articles hal-03122153v1
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Deciphering the Molecular Interaction Between the Adhesion G Protein-Coupled Receptor ADGRV1 and its PDZ-Containing Regulator PDZD7

Baptiste Colcombet-Cazenave , Florence Cordier , Yanlei Zhu , Guillaume Bouvier , Eleni Litsardaki , et al.
Frontiers in Molecular Biosciences, 2022, 9, pp.923740. ⟨10.3389/fmolb.2022.923740⟩
Journal articles pasteur-03718251v1

An automatic tool to analyze and cluster macromolecular conformations based on self-organizing maps.

Guillaume Bouvier , Nathan Desdouits , Mathias Ferber , Arnaud Blondel , Michael Nilges
Bioinformatics, 2015, 31 (9), pp.1490-1492. ⟨10.1093/bioinformatics/btu849⟩
Journal articles pasteur-01145388v1

Automatic clustering of docking poses in virtual screening process using self-organizing map

Guillaume Bouvier , Nathalie Evrard-Todeschi , Jean-Pierre Girault , Gildas Bertho
Bioinformatics, 2010, 26 (1), pp.53-60. ⟨10.1093/bioinformatics/btp623⟩
Journal articles hal-03684971v1

Meet-U: Educating through research immersion

Nika Abdollahi , Alexandre Albani , Eric Anthony , Agnes Baud , Mélissa Cardon , et al.
PLoS Computational Biology, 2018, 14 (3), pp.e1005992. ⟨10.1371/journal.pcbi.1005992⟩
Journal articles hal-04011118v1
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Identification of binding sites and favorable ligand binding moieties by virtual screening and self-organizing map analysis.

Emna Harigua-Souiai , Isidro Cortes-Ciriano , Nathan Desdouits , Thérèse E Malliavin , Ikram Guizani , et al.
BMC Bioinformatics, 2015, 16 (1), pp.93. ⟨10.1186/s12859-015-0518-z⟩
Journal articles pasteur-01144936v1

Structural Characterization of Whirlin Reveals an Unexpected and Dynamic Supramodule Conformation of Its PDZ Tandem

Florent Delhommel , Florence Cordier , Benjamin Bardiaux , Guillaume Bouvier , Baptiste Colcombet-Cazenave , et al.
Structure, 2017, 25 (11), pp.1645-1656.e5. ⟨10.1016/j.str.2017.08.013⟩
Journal articles pasteur-02883914v1
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CC17 group B Streptococcus exploits integrins for neonatal meningitis development

Romain Deshayes de Cambronne , Agnès Fouet , Amandine Picart , Anne-Sophie Bourrel , Cyril Anjou , et al.
The Journal of clinical investigation, 2021, 131 (5), pp.e136737. ⟨10.1172/JCI136737⟩
Journal articles hal-03408728v2
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Meet-U: educating through research immersion

Nika Abdollahi , Alexandre Albani , Eric Anthony , Agnes Baud , Mélissa Cardon , et al.
PLoS Computational Biology, 2018, 14 (3), pp.1-10. ⟨10.1371/journal.pcbi.1005992⟩
Journal articles hal-01722019v1
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Automatic building of protein atomic models from cryo-EM density maps using residue co-evolution

Guillaume Bouvier , Benjamin Bardiaux , Riccardo Pellarin , Chiara Rapisarda , Michael Nilges
Preprints, Working Papers, ... pasteur-03063879v1