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Modulation of Aneuploidy in Leishmania donovani during Adaptation to Different In Vitro and In Vivo Environments and Its Impact on Gene Expression

Franck Dumetz , H. Imamura , M. Sanders , V. Seblova , J. Myskova , et al.
mBio, 2017, pp.e00599-17. ⟨10.1128/mBio.00599-17⟩
Journal articles pasteur-01974269v1
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Nuclear and mitochondrial genome sequencing of North-African Leishmania infantum isolates from cured and relapsed visceral leishmaniasis patients reveals variations correlating with geography and phenotype

Giovanni Bussotti , Alia Benkahla , Fakhri Jeddi , Oussama Souiaï , Karim Aoun , et al.
Microbial Genomics, 2020, 6 (10), ⟨10.1099/mgen.0.000444⟩
Journal articles pasteur-03109058v1
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Three-dimensional interactions between integrated HPV genomes and cellular chromatin dysregulate host gene expression in early cervical carcinogenesis

Ian J Groves , Emma La Drane , Marco Michalski , Jack M Monahan , Cinzia G Scarpini , et al.
Preprints, Working Papers, ... pasteur-03210819v1

The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression

Thomas Derrien , Rory Johnson , Giovanni Bussotti , Andrea Tanzer , Sarah Djebali , et al.
Genome Research, 2012, 22, pp.1775-1789. ⟨10.1101/gr.132159.111⟩
Journal articles hal-01205054v1
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Colonization and genetic diversification processes of Leishmania infantum in the Americas

Philipp Schwabl , Mariana C Boité , Giovanni Bussotti , Arne Jacobs , Bjorn Andersson , et al.
Communications Biology, 2021, 4 (1), pp.139. ⟨10.1038/s42003-021-01658-5⟩
Journal articles pasteur-03210732v1
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The oxidative stress response and virulence of pathogenic Leptospira are controlled by the interplay of two peroxide stress regulators

Crispin Zavala-Alvarado , Antony T. Vincent , Odile Sismeiro , Rachel Legendre , Hugo Varet , et al.
Preprints, Working Papers, ... pasteur-03250968v1
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Genome instability drives epistatic adaptation in the human pathogen Leishmania

Giovanni Bussotti , Laura Piel , Pascale Pescher , Malgorzata A. Domagalska , K. Shanmugha Rajan , et al.
Proceedings of the National Academy of Sciences of the United States of America, 2021, 118 (51), pp.e2113744118. ⟨10.1073/pnas.2113744118⟩
Journal articles pasteur-03512631v1
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Intron retention-dependent gene regulation in Cryptococcus neoformans

Sara Gonzalez-Hilarion , Damien Paulet , Kyung-Tae Lee , Chung-Chau Hon , Pierre Lechat , et al.
Scientific Reports, 2016, 6 (1), pp.32252. ⟨10.1038/srep32252⟩
Journal articles pasteur-02861773v1
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Post-transcriptional regulation of Leishmania fitness gain

Laura Piel , K. Shanmugha Rajan , Giovanni Bussotti , Hugo Varet , Rachel Legendre , et al.
Preprints, Working Papers, ... pasteur-03210825v1
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Haplotype selection as an adaptive mechanism in the protozoan pathogen Leishmania donovani

Pablo Prieto Barja , Pascale Pescher , Giovanni Bussotti , Franck Dumetz , Hideo Imamura , et al.
Nature Ecology & Evolution, 2017, 1 (12), pp.1961-1969. ⟨10.1038/s41559-017-0361-x⟩
Journal articles pasteur-02107201v1
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Trans-Atlantic Spillover: Deconstructing the Ecological Adaptation of Leishmania infantum in the Americas

Mariana Boité , Gerald Späth , Giovanni Bussotti , Renato Porrozzi , Fernanda Morgado , et al.
Genes, 2020, 11 (1), pp.4. ⟨10.3390/genes11010004⟩
Journal articles pasteur-02770535v1
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BlastR-fast and accurate database searches for non-coding RNAs

Giovanni Bussotti , Emanuele Raineri , Ionas Erb , Matthias Zytnicki , Andreas Wilm , et al.
Nucleic Acids Research, 2011, 39 (16), pp.6886-6895. ⟨10.1093/nar/gkr335⟩
Journal articles hal-02644812v1
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Long noncoding RNAs with enhancer-like function in human cells

Thomas Derrien , Malte Beringer , Kiranmai Gumireddy , Alessandro Gardini , Giovanni Bussotti , et al.
Cell, 2010, 143 (1), pp.46-58. ⟨10.1016/j.cell.2010.09.001⟩
Journal articles hal-02668720v1
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The oxidative stress response of pathogenic Leptospira is controlled by two peroxide stress regulators which putatively cooperate in controlling virulence

Crispin Zavala-Alvarado , Samuel G. Huete , Antony T. Vincent , Odile Sismeiro , Rachel Legendre , et al.
PLoS Pathogens, 2021, 17 (12), pp.e1009087. ⟨10.1371/journal.ppat.1009087⟩
Journal articles pasteur-03464148v1
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The transcriptional response of pathogenic Leptospira to peroxide reveals new defenses against infection-related oxidative stress

Crispin Zavala-Alvarado , Odile Sismeiro , Rachel Legendre , Hugo Varet , Giovanni Bussotti , et al.
PLoS Pathogens, 2020, 16 (10), pp.e1008904. ⟨10.1371/journal.ppat.1008904⟩
Journal articles pasteur-02970798v1
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Leishmania Genome Dynamics during Environmental Adaptation Reveal Strain-Specific Differences in Gene Copy Number Variation, Karyotype Instability, and Telomeric Amplification

Giovanni Bussotti , Evi Gouzelou , Mariana Côrtes Boité , Ihcen Kherachi , Zoubir Harrat , et al.
mBio, 2018, 9 (6), pp.e01399-18. ⟨10.1128/mBio.01399-18⟩
Journal articles pasteur-01974308v1
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Targeting Macrophage Histone H3 Modification as a Leishmania Strategy to Dampen the NF-κB/NLRP3-Mediated Inflammatory Response

Hervé Lecoeur , Eric Prina , Thibault Rosazza , Kossiwa Kokou , Paya N'Diaye , et al.
Cell Reports, 2020, 30 (6), pp.1870-1882.e4. ⟨10.1016/j.celrep.2020.01.030⟩
Journal articles pasteur-02562442v1
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GIP: an open-source computational pipeline for mapping genomic instability from protists to cancer cells

Gerald F Späth , Giovanni Bussotti
Nucleic Acids Research, 2021, ⟨10.1093/nar/gkab1237⟩
Journal articles pasteur-03512652v1