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Harvesting of Prebiotic Fructooligosaccharides by Nonbeneficial Human Gut Bacteria

Zhi Wang , Alexandra S. Tauzin , Elisabeth Laville , Pietro Tedesco , Fabien Letisse , et al.
mSphere, 2020, 5 (1), 26 p. ⟨10.1128/mSphere.00771-19⟩
Journal articles hal-02478442v1
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Bacteroidetes use thousands of enzyme combinations to break down glycans

Pascal Lapébie , Vincent Lombard , Elodie Drula , Nicolas Terrapon , Bernard Henrissat
Nature Communications, 2019, 10 (2043), pp.1. ⟨10.1038/s41467-019-10068-5⟩
Journal articles hal-02588181v1
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Unraveling the pectinolytic function of Bacteroides xylanisolvens using a RNA-seq approach and mutagenesis

Jordane Despres , Evelyne Forano , Pascale Lepercq , Sophie Comtet-Marre , Gregory Jubelin , et al.
BMC Genomics, 2016, 27 (17), ⟨10.1186/s12864-016-2758-3⟩
Journal articles hal-01439068v1

Interspecies Competition Impacts Targeted Manipulation of Human Gut Bacteria by Fiber-Derived Glycans

Michael Patnode , Zachary Beller , Nathan Han , Jiye Cheng , Samantha Peters , et al.
Cell, 2019, 179 (1), pp.59-73.e13. ⟨10.1016/j.cell.2019.08.011⟩
Journal articles hal-02588032v1

Dietary pectic glycans are degraded by coordinated enzyme pathways in human colonic Bacteroides

Ana R Luis , Jonathon Briggs , Xiaoyang Zhang , Benjamin Farnell , Didier Ndeh , et al.
Nature Microbiology, 2018, 3 (2), pp.210-219. ⟨10.1038/s41564-017-0079-1⟩
Journal articles hal-02094616v1
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Fitting hidden Markov models of protein domains to a target species: application to Plasmodium falciparum.

Nicolas Terrapon , Olivier Gascuel , Eric Marechal , Laurent Brehelin
BMC Bioinformatics, 2012, 13 (1), pp.67. ⟨10.1186/1471-2105-13-67⟩
Journal articles hal-00701611v1

Metabolism of multiple glycosaminoglycans by Bacteroides thetaiotaomicron is orchestrated by a versatile core genetic locus

Didier Ndeh , Arnaud Baslé , Henrik Strahl , Urszula Mcclurgg , Bernard Henrissat , et al.
Nature Communications, 2020, 11 (1), ⟨10.1038/s41467-020-14509-4⟩
Journal articles hal-03162776v1

A bioinformatics analysis of 3400 lytic polysaccharide oxidases from family AA9

Nicolas Lenfant , Matthieu Hainaut , Nicolas Terrapon , Elodie Drula , Vincent Lombard , et al.
Carbohydrate Research, 2017, 448, pp.166-174. ⟨10.1016/j.carres.2017.04.012⟩
Journal articles hal-01595066v1

The CAZy Database/the Carbohydrate-Active Enzyme (CAZy) Database: Principles and Usage Guidelines

Nicolas Terrapon , Vincent Lombard , Elodie Drula , Pedro Coutinho , Bernard Henrissat
A Practical Guide to Using Glycomics Databases, Springer Japan, pp.117-131, 2017, ⟨10.1007/978-4-431-56454-6_6⟩
Book sections hal-03508817v1
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Bioinformatic Analysis of Lytic Polysaccharide Monooxygenases Reveals the Pan-Families Occurrence of Intrinsically Disordered C-Terminal Extensions

Ketty C Tamburrini , Nicolas Terrapon , Vincent Lombard , Bastien Bissaro , Sonia Longhi , et al.
Biomolecules, 2021, 11 (11), pp.1632. ⟨10.3390/biom11111632⟩
Journal articles hal-03431539v1
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How members of the human gut microbiota overcome the sulfation problem posed by glycosaminoglycans

Alan Cartmell , Elisabeth Lowe , Arnaud Basle , Susan Firbank , Didier Ndeh , et al.
Proceedings of the National Academy of Sciences of the United States of America, 2017, 114 (27), pp.7037-7042. ⟨10.1073/pnas.1704367114⟩
Journal articles hal-01802836v1
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Recherche de domaines protéiques divergents à l'aide de modèles de Markov cachés : application à Plasmodium falciparum

Nicolas Terrapon
Bio-informatique [q-bio.QM]. Université Montpellier II - Sciences et Techniques du Languedoc, 2010. Français. ⟨NNT : ⟩
Theses tel-00811835v1
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Genome Features of Asaia sp. W12 Isolated from the Mosquito Anopheles stephensi Reveal Symbiotic Traits

Shicheng Chen , Ting Yu , Nicolas Terrapon , Bernard Henrissat , Edward D Walker
Genes, 2021, 12 (5), pp.752. ⟨10.3390/genes12050752⟩
Journal articles hal-03279784v1
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EuPathDomains: The Divergent Domain Database for Eukaryotic Pathogens

Amel Ghouila , Nicolas Terrapon , Olivier Gascuel , Fatma Guerfali , Dhafer Laouini , et al.
Infection, Genetics and Evolution, 2011, 11 (4), pp.698-707. ⟨10.1016/j.meegid.2010.09.008⟩
Journal articles istex lirmm-00540932v1
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Gut microbiome of the largest living rodent harbors unprecedented enzymatic systems to degrade plant polysaccharides

Lucelia Cabral , Gabriela Persinoti , Douglas Paixão , Marcele Martins , Mariana Morais , et al.
Nature Communications, 2022, 13 (1), pp.629. ⟨10.1038/s41467-022-28310-y⟩
Journal articles hal-03589026v1
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A fibrolytic potential in the human ileum mucosal microbiota revealed by functional metagenomic

Orlane Patrascu , Fabienne Beguet-Crespel , Ludovica Marinelli , Emmanuelle Le Chatelier , Anne-Laure Abraham , et al.
Scientific Reports, 2017, 7, ⟨10.1038/srep40248⟩
Journal articles hal-01606551v1
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Identification of divergent protein domains by combining HMM-HMM comparisons and co-occurrence detection

Amel Ghouila , Isabelle Florent , Fatma Zahra Guerfali , Nicolas Terrapon , Dhafer Laouini , et al.
PLoS ONE, 2014, 9 (6), pp.e95275. ⟨10.1371/journal.pone.0095275⟩
Journal articles pasteur-01060276v1
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Functional exploration of the glycoside hydrolase family GH113

Marie Couturier , Mélanie Touvrey-Loiodice , Nicolas Terrapon , Elodie Drula , Laurine Buon , et al.
PLoS ONE, 2022, 17 (4), pp.1-14. ⟨10.1371/journal.pone.0267509⟩
Journal articles hal-03656671v1
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Microbiota-directed fibre activates both targeted and secondary metabolic shifts in the distal gut

Leszek Michalak , John Christian Gaby , Leidy Lagos , Sabina Leanti La Rosa , Torgeir Hvidsten , et al.
Nature Communications, 2020, 11 (1), ⟨10.1038/s41467-020-19585-0⟩
Journal articles hal-03163522v1
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Unraveling the pectinolytic function of Bacteroides xylanisolvens using a RNA-seq approach and mutagenesis

Jordane Despres , Evelyne Forano , Pascale Lepercq , Sophie Comtet-Marre , Gregory Jubelin , et al.
BMC Genomics, 2016, 17 (1), pp.147. ⟨10.1186/s12864-016-2472-1⟩
Journal articles hal-01439085v1
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Xylan degradation by the human gut Bacteroides xylanisolvens XB1A(T) involves two distinct gene clusters that are linked at the transcriptional level

Jordane Despres , Evelyne Forano , Pascale Lepercq , Sophie Comtet-Marre , Gregory Jubelin , et al.
BMC Genomics, 2016, 17 (1), ⟨10.1186/s12864-016-2680-8⟩
Journal articles hal-01439065v1

Comparative genomic analyses reveal diverse virulence factors and antimicrobial resistance mechanisms in clinical Elizabethkingia meningoseptica strains

Jochen Blom , Nicolas Terrapon , Shicheng Chen , Marty Soehnlen , Jochen Blom Id , et al.
PLoS ONE, 2019, 14 (10), pp.e0222648. ⟨10.1371/journal.pone.0222648⟩
Journal articles hal-02972534v1
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Unusual active site location and catalytic apparatus in a glycoside hydrolase family

Jose Munoz-Munoz , Alan Cartmell , Nicolas Terrapon , Bernard Henrissat , Harry J. Gilbert
Proceedings of the National Academy of Sciences of the United States of America, 2017, 114 (19), pp.4936-4941. ⟨10.1073/pnas.1701130114⟩
Journal articles hal-01607615v1

Discovery of novel carbohydrate-active enzymes through the rational exploration of the protein sequences space

William Helbert , Laurent Poulet , Sophie Drouillard , Sophie Mathieu , Mélanie Loiodice , et al.
Proceedings of the National Academy of Sciences of the United States of America, 2019, 116 (13), pp.6063-6068. ⟨10.1073/pnas.1815791116⟩
Journal articles hal-02108378v1
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Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection

Rekha Seshadri , Sinead Leahy , Graeme Attwood , Koon Hoong Teh , Suzanne Lambie , et al.
Nature Biotechnology, 2018, 36 (4), pp.359-367. ⟨10.1038/nbt.4110⟩
Journal articles hal-02094598v1
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PULDB: the expanded database of Polysaccharide Utilization Loci

Nicolas Terrapon , Vincent Lombard , Elodie Drula , Pascal Lapébie , Saad Al-Masaudi , et al.
Nucleic Acids Research, 2018, 46 (D1), pp.D677-D683. ⟨10.1093/nar/gkx1022⟩
Journal articles hal-02094620v1

Glycoside hydrolase subfamily GH5_57 features a highly redesigned catalytic interface to process complex hetero-β-mannans

Marcele Martins , Mariana Morais , Gabriela Persinoti , Rafael Galinari , Li Yu , et al.
Acta crystallographica Section D : Structural biology [1993-..], 2022, 78 (11), pp.1358-1372. ⟨10.1107/S2059798322009561⟩
Journal articles hal-03982004v1

Fitting Hidden Markov Models of Protein Domains to a Target Species

Nicolas Terrapon , Olivier Gascuel , Laurent Brehelin
JOBIM: Journées Ouvertes Biologie, Informatique, Mathématiques, Jun 2011, Paris, France. pp.193-194
Conference papers lirmm-00725501v1
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Complex pectin metabolism by gut bacteria reveals novel catalytic functions

Didier Ndeh , Artur Rogowski , Alan Cartmell , Ana S. Luis , Arnaud Basle , et al.
Nature, 2017, 544 (7648), pp.65 - +. ⟨10.1038/nature21725⟩
Journal articles hal-01595600v1

Automatic prediction of polysaccharide utilization loci in Bacteroidetes species

Nicolas Terrapon , Vincent Lombard , Harry J. Gilbert , Bernard Henrissat
Bioinformatics, 2015, 31 (5), pp.647-655. ⟨10.1093/bioinformatics/btu716⟩
Journal articles hal-01438994v1