Long-read and chromosome-scale assembly of the hexaploid wheat genome achieves high resolution for research and breeding
Jean-Marc Aury
,
Stefan Engelen
,
Benjamin Istace
,
Cécile Monat
,
Pauline Lasserre-Zuber
et al.
Journal articles
hal-03658639v1
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De novo annotation of transposable elements : tackling the fat genome issue
Véronique Jamilloux
,
Josquin Daron
,
Frédéric Choulet
,
Hadi Quesneville
Journal articles
hal-02622009v1
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Dynamics of transposable elements in the 16 Gb hexaploid wheat genome
Frédéric Choulet
Congrès National des Eléments Transposables (CNET) 2018 , Jul 2018, Clermont-Ferrand, France
Conference papers
hal-02293544v1
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Deciphering carbohydrate metabolism during wheat grain development via integrated transcriptome and proteome dynamics
Ayesha Tahir
,
Jun Kang
,
Frédéric Choulet
,
Catherine Ravel
,
Isabelle Romeuf
et al.
Journal articles
hal-02904006v1
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High-resolution analysis of a QTL for resistance to Stagonospora nodorum glume blotch in wheat reveals presence of two distinct resistance loci in the target interval
Margarita Shatalina
,
Monika Messmer
,
Catherine C. Feuillet
,
Fabio Mascher
,
Etienne Paux
et al.
Journal articles
hal-02633712v1
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A reference sequence of bread wheat chromosome 3B
Frédéric Choulet
JOBIM Journées Ouvertes en Biologie, Informatique et Mathématiques , Université d'Auvergne - Clermont-Ferrand I (UdA). FRA., Jul 2015, Clermont-Ferrand, France
Conference papers
hal-02299635v1
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A strategy to assemble a reference sequence of the 1 Gb wheat chromosome 3B
Frédéric Choulet
,
Sébastien Theil
,
Josquin Daron
,
Natasha Marie Glover
,
Nicolas N. Guilhot
et al.
TGAC/ESF-LESC workshop, Strategies for de novo assemblies of complex crop genomes , Genome Analysis Centre (TGAC). Norwich, GBR., Oct 2012, Norwich, United Kingdom
Conference papers
hal-02809032v1
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Challenges of gene and repeat annotation of the wheat genome sequence
Frédéric Choulet
Plant and Animal Genome XXV Conference; IWGSC Standards and Protocoles Workshop , 2017, San Diego, CA, United States
Conference papers
hal-02340462v1
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Location and Identification on Chromosome 3B of Bread Wheat of Genes Affecting Chiasma Number
Benoit Darrier
,
Isabelle Colas
,
Hélène Rimbert
,
Frédéric Choulet
,
Jeanne Bazile
et al.
Journal articles
hal-03766369v1
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Deep transcriptome sequencing provides new insights into the structural and functional organization of the wheat genome
Lise Pingault
,
Frédéric Choulet
,
Adriana A. Alberti
,
Natasha Marie Glover
,
Patrick Wincker
et al.
Journal articles
hal-02635440v1
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Small-scale gene duplications played a major role in the recent evolution of wheat chromosome 3B
Natasha Marie Glover
,
Josquin Daron
,
Lise Pingault
,
Klaas Vandepoele
,
Etienne Paux
et al.
Journal articles
hal-01244498v1
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Sequencing, annotation and characterization of 17 Mb of chromosome 3B contigs provide novel insights into the wheat genome organization and evolution
Frédéric Choulet
,
Etienne Paux
,
Jerome J. Salse
,
Philippe Leroy
,
Ghislaine Magdelenat
et al.
19. International Triticeae Mapping Initiative - 3rd COST Tritigen , 2009, Clermont-Ferrand, France
Conference papers
hal-02818223v1
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Assessing structural variations of the hexaploid wheat genome
Frédéric Choulet
Plant and Animal Genome XXIV Conference; Trticeae Genetics and Genomics Workshop , Jan 2016, San Diego, CA, United States
Conference papers
hal-02299630v1
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Optical maps refine the bread wheat Triticum aestivum cv. Chinese Spring genome assembly
Tingting Zhu
,
Le Wang
,
Hélène Rimbert
,
Juan Rodriguez
,
Karin Deal
et al.
Journal articles
hal-03285883v1
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Intraspecific Variability of the Terminal Inverted Repeats of the Linear Chromosome of Streptomyces ambofaciens
Frédéric Choulet
,
Alexandre Gallois
,
B. Aigle
,
Sophie Mangenot
,
Claude Gerbaud
et al.
Journal articles
hal-01659064v1
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Sequencing and Analyses of the Hexaploid Wheat Chromosome 3B
Frédéric Choulet
,
P. Wincker
,
Hadi Quesneville
,
Dominique D. Brunel
,
B. Gill
et al.
19. Conference on Plant and Animal Genome , Jan 2011, San Diego, CA, United States
Conference papers
hal-02747876v1
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Structural variations affecting genes and transposable elements of chromosome 3B in wheats
Romain de Oliveira
,
Hélène Rimbert
,
François Balfourier
,
Jonathan Kitt
,
Emeric Dynomant
et al.
Journal articles
hal-02917729v1
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Dynamics of transposable elements in the 16 Gb hexaploid wheat genome
Frédéric Choulet
Journée annotation structurale et fonctionnelle des génomes eukaryotes , Nov 2018, Paris, France
Conference papers
hal-02786910v1
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Worldwide phylogeography and history of wheat genetic diversity
François Balfourier
,
Sophie Bouchet
,
Sandra Robert
,
Romain de Oliveira
,
Hélène Rimbert
et al.
Journal articles
hal-02172516v1
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Shifting the limits in wheat research and breeding using a fully annotated reference genome
. International Wheat Genome Sequencing Consortium (iwgsc)
,
Arnaud Bellec
,
Helene Berges
,
Sonia Vautrin
,
Michael Alaux
et al.
Journal articles
hal-01885399v1
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IWGSC sequence repository : how to facilitate pseudomolecule assembly?
Michael M. Alaux
,
Frédéric Choulet
,
Loïc Couderc
,
Françoise F. Alfama-Depauw
,
Véronique Jamilloux
et al.
PAG XXIII - Plant and Animal Genome Conference , Jan 2015, San Diego, United States
Conference papers
hal-02741662v1
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A reference sequence of wheat chromosome 3B
Frédéric Choulet
,
Adriana A. Alberti
,
Sébastien Theil
,
Natasha Marie Glover
,
Valérie Barbe
et al.
22. Conference on Plant and Animal Genome , Jan 2014, San Diego, United States
Conference papers
hal-02742303v1
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Capturing Wheat Phenotypes at the Genome Level
Babar Hussain
,
Bala A Akpınar
,
Michael Alaux
,
Ahmed M Algharib
,
Deepmala Sehgal
et al.
Journal articles
hal-03740520v1
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SMART: Sequencing and molecular analysis of a 12 cM locus carrying multiple durable disease resistance genes on chromosome 3BS in hexaploid wheat
Frédéric Choulet
,
Etienne Paux
,
Bikram Gill
,
Rudi Appels
,
Beat Keller
et al.
Séminaire GENOPLANTE 2008 , 2008, Arles, France.
, 2008
Poster communications
hal-02820797v1
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Transcriptome and Allele Specificity Associated with a 3BL Locus for Fusarium Crown Rot Resistance in Bread Wheat
Jian Ma
,
Jiri Stiller
,
Qiang Zhao
,
Qi Feng
,
Colin Cavanagh
et al.
Journal articles
hal-02637351v1
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Structural and Functional Partitioning of Bread Wheat Chromosome 3B
Frédéric Choulet
,
Adriana A. Alberti
,
Sébastien Theil
,
Natasha Marie Glover
,
Valérie Barbe
et al.
Journal articles
hal-02638189v1
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Meiotic Gene Evolution: Can You Teach a New Dog New Tricks?
Andrew Lloyd
,
Marion Ranoux
,
Sonia S. Vautrin
,
Natasha Marie Glover
,
Joëlle Fourment
et al.
Journal articles
hal-02635778v1
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QTug.sau-3B Is a Major Quantitative Trait Locus for Wheat Hexaploidization
Ming Hao
,
Jiangtao Luo
,
Deying Zeng
,
Li Zhang
,
Shunzong Ning
et al.
Journal articles
hal-02633053v1
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The IWGSC: Strategies and activities to sequence the bread wheat genome
Frédéric Choulet
Plant Genomes' Day , Institut National de Recherche Agronomique (INRA). US Centre National de Ressources Génomiques Végétales (1258)., Jun 2014, Toulouse, France
Conference papers
hal-02795856v1
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Annotation, classification, genomic organization and expression of the Vitis vinifera CYPome
T Ilc
,
Gautier Arista
,
Raquel Tavares
,
Nicolas Navrot
,
Eric Duchêne
et al.
PLoS ONE , 2018, 13 (6)
Journal articles
hal-02269561v1
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