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Modeling Dynamics of Cell-to-Cell Variability in TRAIL-Induced Apoptosis Explains Fractional Killing and Predicts Reversible Resistance

François Bertaux , Szymon Stoma , Dirk Drasdo , Gregory Batt
PLoS Computational Biology, 2014, 10 (10), pp.14. ⟨10.1371/journal.pcbi.1003893.s016⟩
Journal articles hal-00942885v2

Growth-Rate Dependent And Nutrient-Specific Gene Expression Resource Allocation In Fission Yeast

Istvan Kleijn , Amalia Martínez-Segura , François Bertaux , Malika Saint , Holger Kramer et al.
2021
Preprints, Working Papers, ... hal-03261217v1

External control of microbial populations for bioproduction: A modeling and optimization viewpoint

François Bertaux , Jakob Ruess , Grégory Batt
Current Opinion in Systems Biology, 2021, 28, pp.100394. ⟨10.1016/j.coisb.2021.100394⟩
Journal articles hal-03536479v1
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A bacterial size law revealed by a coarse-grained model of cell physiology

François Bertaux , Julius von Kügelgen , Samuel Marguerat , Vahid Shahrezaei
PLoS Computational Biology, 2020, 16 (9), ⟨10.1371/journal.pcbi.1008245⟩
Journal articles hal-03152985v1
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STL-based Analysis of TRAIL-induced Apoptosis Challenges the Notion of Type I/Type II Cell Line Classification

Szymon Stoma , Alexandre Donzé , François Bertaux , Oded Maler , Gregory Batt et al.
PLoS Computational Biology, 2013, 9 (5), pp.e1003056. ⟨10.1371/journal.pcbi.1003056⟩
Journal articles hal-00926593v1
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Maximum-Likelihood Inference of Population Size Contractions from Microsatellite Data

Raphaël Leblois , Pierre Pudlo , Néron Joseph , François Bertaux , Champak Reddy Beeravolu et al.
Molecular Biology and Evolution, 2014, 31 (10), pp.2805-2823. ⟨10.1093/molbev/msu212⟩
Journal articles hal-02087423v1

Abstracting the dynamics of biological pathways using information theory: a case study of apoptosis pathway

Sucheendra K. Palaniappan , François Bertaux , Matthieu Pichené , Eric Fabre , Gregory Batt et al.
Bioinformatics, 2017, 33 (13), pp.1980 - 1986. ⟨10.1093/bioinformatics/btx095⟩
Journal articles hal-01547618v1
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Enabling reactive microscopy with MicroMator

Zachary Fox , Steven Fletcher , Achille Fraisse , Chetan Aditya , Sebastián Sosa-Carrillo et al.
Nature Communications, 2022, 13, pp.2199. ⟨10.1038/s41467-022-29888-z⟩
Journal articles hal-03261134v2
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Using single-cell models to predict the functionality of synthetic circuits at the population scale

Chetan Aditya , François Bertaux , Gregory Batt , Jakob Ruess
Proceedings of the National Academy of Sciences of the United States of America, 2022, 119 (11), pp.e2114438119. ⟨10.1073/pnas.211443811⟩
Journal articles hal-03544044v2
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System modeling of receptor-induced apoptosis

François Bertaux , Dirk Drasdo , Gregory Batt
Olivier Micheau. TRAIL, Fas Ligand, TNF and TLR3 in Cancer, 12, 2017, Resistance to Targeted Anti-Cancer Therapeutics, 978-3-319-56804-1
Book sections hal-01667015v1
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STL-based analysis of TRAIL-induced apoptosis challenges the notion of type I/type II cell line classification

Szymon Stoma , Alexandre Donzé , François Bertaux , Oded Maler , Grégory Batt et al.
[Research Report] RR-8121, INRIA. 2012, pp.35
Reports hal-00750063v1

Maximizing protein production by keeping cells at optimal secretory stress levels using real-time control approaches

Sebastián Sosa-Carrillo , Henri Galez , Sara Napolitano , François Bertaux , Gregory Batt et al.
2023
Preprints, Working Papers, ... hal-03940186v1

Model Prediction and Validation of an Order Mechanism Controlling the Spatiotemporal Phenotype of Early Hepatocellular Carcinoma

Stefan Hoehme , François Bertaux , William Weens , Bettina Grasl-Kraupp , Jan Hengstler et al.
Bulletin of Mathematical Biology, 2018, 80 (5), pp.1134-1171
Journal articles hal-01968844v1
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Model prediction and validation of an order mechanism controlling the spatio-temporal phenotype of early hepatocellular carcinoma

François Bertaux , Stefan Hoehme , William Weens , Bettina Grasl-Kraupp , Jan G. Hengstler et al.
2016
Preprints, Working Papers, ... hal-01426629v1
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Cell-based multi-scale modeling for systems and synthetic biology : from stochastic gene expression in single cells to spatially organized cell populations

François Bertaux
Modeling and Simulation. Université Pierre et Marie Curie - Paris VI, 2016. English. ⟨NNT : 2016PA066101⟩
Theses tel-01405430v2

Approximating the dynamics of the Hybrid Stochastic-Deterministic Apoptosis pathway

Sucheendra K. Palaniappan , François Bertaux , Matthieu Pichene , Eric Fabre , Gregory Batt et al.
CMSB 2015, 2015, Nantes, France. CMSB 2015, 2015, CMSB 2015
Poster communications hal-01245034v1
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Enhancing bioreactor arrays for automated measurements and reactive control with ReacSight

François Bertaux , Sebastián Sosa Carrillo , Viktoriia Gross , Achille Fraisse , Chetan Aditya et al.
Nature Communications, 2022, 13, pp.3363. ⟨10.1038/s41467-022-31033-9⟩
Journal articles hal-03744485v2