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Combining DGE and RNA-sequencing data to identify new polyA+ non-coding transcripts in the human genome

Nicolas Philippe , Elias Bou Samra , Anthony Boureux , Alban Mancheron , Florence Rufflé et al.
Nucleic Acids Research, 2014, 42 (5), pp.2820-2832. ⟨10.1093/nar/gkt1300⟩
Journal articles lirmm-01233107v1
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New chimeric RNAs in acute myeloid leukemia

Florence Ruffle , Jérôme Audoux , Anthony Boureux , Sacha Beaumeunier , Jean-Baptiste Gaillard et al.
F1000Research, 2017, 6, ⟨10.12688/f1000research.11352.2⟩
Journal articles hal-01840091v1
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Transcriptome annotation using tandem SAGE tags

Eric Rivals , Anthony Boureux , Mireille Lejeune , Florence Ottones , Oscar Pecharromàn Pérez et al.
Réunion satellite "Transcriptome et bioinformatique", Jul 2007, Marseille, France. pp.8
Conference papers lirmm-00203923v1
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On the evaluation of the fidelity of supervised classifiers in the prediction of chimeric RNAs

Sacha Beaumeunier , Jérôme Audoux , Anthony Boureux , Florence Ruffle , Thérèse Commes et al.
BioData Mining, 2016, 9 (1), pp.34. ⟨10.1186/s13040-016-0112-6⟩
Journal articles inserm-01390470v1

Human Transcriptome Annotation using Tandem SAGE Tags

Eric Rivals , Anthony Boureux , Mireille Lejeune , Florence Ottones , Oscar Pecharromàn Pérez et al.
Integrative Post-Genomics, Nov 2006, Lyon, France. pp.39
Conference papers lirmm-00120164v1
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New prognostic markers, determined using gene expression analyses, reveal two distinct subtypes of chronic myelomonocytic leukaemia patients.

Elias Bou Samra , Jérôme Moreaux , Fabienne Vacheret , Ken Mills , Florence Rufflé et al.
British Journal of Haematology, 2012, 157 (3), pp.347-56. ⟨10.1111/j.1365-2141.2012.09069.x⟩
Journal articles inserm-00681007v1

RNA-Seq Analysis to Detect Abnormal Fusion Transcripts Linked to Chromothripsis

Anne-Laure Bouge , Florence Ruffle , Sébastien Riquier , Benoît Guibert , Jérôme Audoux et al.
Franck Pellestor. Chromothripsis-Methods and Protocols, Humana Press, New York, NY -, pp.133-156, 2018, Hardcover ISBN 978-1-4939-7779-6 ; Softcover ISBN 978-1-4939-9283-6 ; eBook ISBN 978-1-4939-7780-2. ⟨10.1007/978-1-4939-7780-2_9⟩
Book sections hal-02503709v1
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Digital gene expression data, cross-species conservation and noncoding RNA

Nicolas Philippe , Florence Ruffle , Elias Bou Samra , Anthony Boureux , Thérèse Commes et al.
EMBnet.journal, 2011, 17 (Supplement B), pp.1. ⟨10.14806/ej.17.B.288⟩
Journal articles lirmm-00757989v1

Annotation of Human Transcriptome Using Tandem SAGE Tags

Eric Rivals , Anthony Boureux , Mireille Lejeune , Florence Ottones , Oscar Pecharromàn Pérez et al.
Canceropôle Rhones-Alpes Côte d'Azur. 14th CHO Meeting "Stem Cells & Cancer", Oct 2007, Presqu'île de Giens, France. , 2007
Poster communications lirmm-00203895v1
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Transcriptome Annotation using Tandem SAGE Tags

Eric Rivals , Anthony Boureux , Mireille Lejeune , Florence Ottones , Oscar Pecharromàn Pérez et al.
Nucleic Acids Research, 2007, 35 (17), pp.e108. ⟨10.1093/nar/gkm495⟩
Journal articles lirmm-00193291v1
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Long non-coding RNA exploration for mesenchymal stem cell characterisation

Sébastien Riquier , Marc Mathieu , Chloé Bessiere , Anthony Boureux , Florence Rufflé et al.
BMC Genomics, 2021, 22 (1), pp.412. ⟨10.1186/s12864-020-07289-0⟩
Journal articles inserm-03251471v1
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Combining SAGE Tags to Predict Genomic Transcribed Regions

Eric Rivals , Anthony Boureux , Mireille Lejeune , Florence Ottones , Oscar Pecharromàn Pérez et al.
JOBIM'08 : Journées Ouvertes en Biologie, Informatique et Mathématiques, Jun 2008, Lille, France, France. pp.141-146
Conference papers lirmm-00343895v1