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Defining Planktonic Protist Functional Groups on Mechanisms for Energy and Nutrient Acquisition: Incorporation of Diverse Mixotrophic Strategies

Aditee Mitra , Kevin J. Flynn , Urban Tillmann , John A. Raven , David Caron et al.
Protist, 2016, 167 (2), pp.106-120. ⟨10.1016/j.protis.2016.01.003⟩
Journal articles hal-01285634v1

Taming chlorophylls by early eukaryotes underpinned algal interactions and the diversification of the eukaryotes on the oxygenated Earth

Yuichiro Kashiyama , Akiko Yokoyama , Takashi Shiratori , Sebastian Hess , Fabrice Not et al.
ISME Journal, 2019, 13 (8), pp.1899-1910. ⟨10.1038/s41396-019-0377-0⟩
Journal articles hal-03971739v1
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Community‐Level Responses to Iron Availability in Open Ocean Plankton Ecosystems

Luigi Caputi , Quentin Carradec , Damien Eveillard , Amos Kirilovsky , Eric Pelletier et al.
Global Biogeochemical Cycles, 2019, 33 (3), pp.391-419. ⟨10.1029/2018GB006022⟩
Journal articles hal-02999805v1
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Viral to metazoan marine plankton nucleotide sequences from the Tara Oceans expedition

Adriana A. Alberti , Julie Poulain , Stefan Engelen , Karine Labadie , Sarah Romac et al.
Scientific Data , 2017, 4, ⟨10.1038/sdata.2017.93⟩
Journal articles hal-01771844v1
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Bioluminescence and Photoreception in Unicellular Organisms: Light-Signalling in a Bio-Communication Perspective

Youri Timsit , Magali Lescot , Martha Valiadi , Fabrice Not
International Journal of Molecular Sciences, 2021, 22 (21), pp.11311. ⟨10.3390/ijms222111311⟩
Journal articles hal-03402318v1

Freshwater protists: unveiling the unexplored in a large floodplain system

Sebastian Metz , Paula Huber , Victoria Accattatis , Adriana Lopes dos Santos , Estelle Bigeard et al.
Environmental Microbiology, 2022, 24 (4), pp.1731-1745. ⟨10.1111/1462-2920.15838⟩
Journal articles hal-03611307v1

Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.

Alexandra Z Worden , Jae-Hyeok Lee , Thomas Mock , Pierre Rouzé , Melinda P Simmons et al.
Science, 2009, 324 (5924), pp.268-72. ⟨10.1126/science.1167222⟩
Journal articles hal-00693449v1
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Exploring nucleo-cytoplasmic large DNA viruses in Tara Oceans microbial metagenomes

Pascal Hingamp , Nigel Grimsley , Silvia G Acinas , Camille Clerissi , Lucie Subirana et al.
ISME Journal, 2013, 7 (9), pp.1678-1695. ⟨10.1038/ismej.2013.59⟩
Journal articles hal-01258223v1
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A Holistic Approach to Marine Eco-Systems Biology

Eric Karsenti , Silvia G. Acinas , Peer Bork , Chris Bowler , Colomban de Vargas et al.
PLoS Biology, 2011, 9 (10), pp.e1001177. ⟨10.1371/journal.pbio.1001177⟩
Journal articles hal-01893669v1
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The Evolution of Silicon Transport in Eukaryotes

Alan O. Marron , Sarah Ratcliffe , Glen L. Wheeler , Raymond E. Goldstein , Nicole King et al.
Molecular Biology and Evolution, 2016, 12 (12), pp.3226-3248. ⟨10.1093/molbev/msw209⟩
Journal articles hal-01386826v1
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Acquired phototrophy in aquatic protists

Diane K. Stoecker , Matthew D. Johnson , Colomban de Vargas , Fabrice Not
Aquatic Microbial Ecology, 2009, 57 (3, 3), pp.279-310. ⟨10.3354/ame01340⟩
Journal articles hal-01258262v1

Marine DNA Viral Macro- and Microdiversity from Pole to Pole

Ann Gregory , Ahmed Zayed , Nádia Conceição-Neto , Ben Temperton , Ben Bolduc et al.
Cell, 2019, 177 (5), pp.1109-1123.e14. ⟨10.1016/j.cell.2019.03.040⟩
Journal articles hal-02387010v1

Rhizaria: An unexpected role in the carbon biological pump, and in the silica cycle

Aude Leynaert , Natalia Llopis-Monferrer , Miguel Mendez-Sandin , Fabrice Not , Paul Tréguer et al.
SILICAMICS 2 Conference (Biogeochemistry and genomics of silicification and silicifiers), Jun 2018, Victoria, BC, Canada
Conference papers hal-02404533v1

Mare Incognitum: A Glimpse into Future Plankton Diversity and Ecology Research

Guillem Chust , Meike Vogt , Fabio Benedetti , Teofil Nakov , Sébastien Villéger et al.
Frontiers in Marine Science, 2017, 4, pp.68. ⟨10.3389/fmars.2017.00068⟩
Journal articles hal-01545318v1
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Diversity, ecology and biogeochemistry of cyst-forming acantharia (radiolaria) in the oceans.

Johan Decelle , Patrick Martin , Katsiaryna Paborstava , David W Pond , Geraint Tarling et al.
PLoS ONE, 2013, 8 (1), pp.e53598. ⟨10.1371/journal.pone.0053598⟩
Journal articles hal-00817877v1
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Intracellular Diversity of the V4 and V9 Regions of the 18S rRNA in Marine Protists (Radiolarians) Assessed by High-Throughput Sequencing

Johan Decelle , Sarah Romac , Eriko Sasaki , Fabrice Not , Frédéric Mahé et al.
PLoS ONE, 2014, 9 (8), pp.e104297. ⟨10.1371/journal.pone.0104297⟩
Journal articles hal-01100668v1
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Diatom diversity through HTS-metabarcoding in coastal European seas

Roberta Piredda , Jean-Michel Claverie , Johan Decelle , Colomban de Vargas , Micah Dunthorn et al.
Scientific Reports, 2018, 8 (1), pp.18059 (2018). ⟨10.1038/s41598-018-36345-9⟩
Journal articles hal-01978355v1

Putative sponge biomarkers in unicellular Rhizaria question an early rise of animals

Benjamin Nettersheim , Jochen Brocks , Arne Schwelm , Janet Hope , Fabrice Not et al.
Nature Ecology & Evolution, 2019, 3 (4), pp.577-581. ⟨10.1038/s41559-019-0806-5⟩
Journal articles hal-03971569v1

Cryptic and abundant marine viruses at the evolutionary origins of Earth’s RNA virome

Ahmed Zayed , James Wainaina , Guillermo Dominguez-Huerta , Eric Pelletier , Jiarong Guo et al.
Science, 2022, 376 (6589), pp.156-162. ⟨10.1126/science.abm5847⟩
Journal articles hal-03869389v1
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No evidence of Phago‐mixotropy in Micromonas polaris (Mamiellophyceae), the Dominant Picophytoplankton Species in the Arctic

Valeria Jimenez , John A Burns , Florence Le Gall , Fabrice Not , Daniel Vaulot et al.
Journal of Phycology, 2021, 57 (2), pp.435-446. ⟨10.1111/jpy.13125⟩
Journal articles hal-03267092v1
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Carbon and nitrogen content to biovolume relationships for marine protist of the Rhizaria lineage (Radiolaria and Phaeodaria)

Joost Samir Mansour , Andreas Norlin , Natalia Llopis Monferrer , Stéphane L'Helguen , Fabrice Not et al.
Limnology and Oceanography, 2021, ⟨10.1002/lno.11714⟩
Journal articles hal-03190242v1
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Role of small Rhizaria and diatoms in the pelagic silica production of the Southern Ocean

Natalia Llopis Monferrer , Aude Leynaert , Paul Tréguer , Andrés Gutiérrez-Rodríguez , Mikel Latasa et al.
Limnology and Oceanography, 2021, 66 (6), ⟨10.1002/lno.11743⟩
Journal articles hal-03213360v1

Middle Ordovician acritarchs and problematic organic-walled microfossils from the Saq-Hanadir transitional beds in the QSIM-801 well, Saudi Arabia

Alain Le Hérissé , Marco Vecoli , Claudia Guidat , Fabrice Not , Pierre Breuer et al.
Revue de Micropaléontologie, 2017, 60 (3), pp.289 - 318. ⟨10.1016/j.revmic.2017.08.001⟩
Journal articles hal-01919447v1

Extreme diversity in noncalcifying haptophytes explains a major pigment paradox in open oceans

Hui Liu , Ian Probert , Julia Uitz , Hervé Claustre , Stephane Aris-Brosou et al.
Proceedings of the National Academy of Sciences of the United States of America, 2009, 106 (31), pp.12803-12808. ⟨10.1073/pnas.0905841106⟩
Journal articles hal-01258271v1
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New Insights into the Diversity of Marine Picoeukaryotes

Fabrice Not , Javier Del Campo , Vanessa Balague , Colomban de Vargas , Ramon Massana et al.
PLoS ONE, 2009, 4 (9), pp.e7143. ⟨10.1371/journal.pone.0007143⟩
Journal articles hal-01258270v1
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Distribution and host diversity of Amoebophryidae parasites across oligotrophic waters of the Mediterranean Sea

R. Siano , C. Alves-De-Souza , Elodie Foulon , El Mahdi Bendif , Nathalie Simon et al.
Biogeosciences, 2011, 8 (2), pp.267-278. ⟨10.5194/bg-8-267-2011⟩
Journal articles hal-01254008v1
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Brandtodinium gen. nov. and B. nutricula comb. Nov. (Dinophyceae), a dinoflagellate commonly found in symbiosis with polycystine radiolarians

Ian Probert , Raffaele Siano , Camille Poirier , Johan Decelle , Tristan Biard et al.
Journal of Phycology, 2014, 50 (2), pp.388-399. ⟨10.1111/jpy.12174⟩
Journal articles hal-01140979v1

Determinants of community structure in the global plankton interactome

Gipsi Lima-Mendez , Karoline Faust , Nicolas Henry , Johan Decelle , Sébastien Colin et al.
Science, 2015, 348 (6237), pp.1262073. ⟨10.1126/science.1262073⟩
Journal articles hal-01234200v1
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Marine protist diversity in European coastal waters and sediments as revealed by high-throughput sequencing

Ramon Massana , Angélique Gobet , Stéphane Audic , David Bass , Lucie Bittner et al.
Environmental Microbiology, 2015, 17 (10), pp.4035-4049. ⟨10.1111/1462-2920.12955⟩
Journal articles hal-01191731v1
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Dimethylated sulfur compounds in symbiotic protists: A potentially significant source for marine DMS(P)

Andres Gutierrez-Rodriguez , Loic Pillet , Tristan Biard , Ward Said-Ahmad , Alon Amrani et al.
Limnology and Oceanography, 2017, 62 (3 ), pp.1139-1154 ⟨10.1002/lno.10491⟩
Journal articles hal-01480231v1