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Feature extraction and signal processing for nylon DNA microarrays.

Fabrice Lopez , Jacques Rougemont , Béatrice Loriod , Aude Bourgeois , Laurence Loï et al.
BMC Genomics, 2004, 5 (1), pp.38. ⟨10.1186/1471-2164-5-38⟩
Journal articles inserm-00112016v1

The disparate nature of “intergenic” polyadenylation sites

Fabrice Lopez , Samuel Granjeaud , Takeshi Ara , Badih Ghattas , Daniel Gautheret et al.
RNA, 2006, 12 (10), pp.1794-1801. ⟨10.1261/rna.136206⟩
Journal articles hal-03582610v1
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TranscriptomeBrowser: a powerful and flexible toolbox to explore productively the transcriptional landscape of the Gene Expression Omnibus database

F. Lopez , J. Textoris , A. Bergon , G. Didier , E. Rémy et al.
PLoS ONE, 2008, 3 (12), pp.e4001. ⟨10.1371/journal.pone.0004001⟩
Journal articles hal-01595819v1

Genomic trajectories to fluoroquinolone resistance in Francisella tularensis subsp. holarctica live vaccine strain

Vivien Sutera , Aurélie Hennebique , Fabrice Lopez , Nicolas Fernandez , Dominique Schneider et al.
International Journal of Antimicrobial Agents, 2020, 56, ⟨10.1016/j.ijantimicag.2020.106153⟩
Journal articles hal-03139160v1

Étude des conditions de lumière sur des sites d'accidents nocturnes pour l'analyse de leur contribution aux dysfonctionnements perceptifs

Marie Claude Montel , Paul Verny , Joël Magnin , Fabrice Lopez
Journée scientifique "Les études détaillées d'accidents de l'IFSTTAR: Contributions à la connaissance en sécurité routière", Oct 2019, Marne-la-Vallée, France. 17p
Conference papers hal-02491872v1
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Defect in the nuclear pore membrane glycoprotein 210-like gene is associated with extreme uncondensed sperm nuclear chromatin and male infertility: a case report

Karim Arafah , Fabrice Lopez , Caroline Cazin , Zine‐eddine Kherraf , Virginie Tassistro et al.
Human Reproduction, 2021, 36 (3), pp.693-701. ⟨10.1093/humrep/deaa329⟩
Journal articles hal-02985525v1
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ReMap 2022: a database of Human, Mouse, Drosophila and Arabidopsis regulatory regions from an integrative analysis of DNA-binding sequencing experiments

Fayrouz Hammal , Pierre De langen , Aurélie Bergon , Fabrice Lopez , Benoit Ballester et al.
Nucleic Acids Research, 2022, ⟨10.1093/nar/gkab996⟩
Journal articles hal-03433360v1
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Explore, edit and leverage genomic annotations using Python GTF toolkit

Fabrice Lopez , Guillaume Charbonnier , Yasmina Kermezli , Mohamed Belhocine , Quentin Ferré et al.
Journal articles hal-02078147v1

Differential repression of alternative transcripts : a screen for miRNA targets

M. Legendre , W. Ritchie , F. Lopez , D. Gautheret
PLoS Computational Biology, 2006, 2, pp.n° e43
Journal articles hal-00109544v1
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AltTrans: transcript pattern variants annotated for both alternative splicing and alternative polyadenylation.

Vincent Le Texier , Jean-Jack Riethoven , Vasudev Kumanduri , Chellappa Gopalakrishnan , Fabrice Lopez et al.
BMC Bioinformatics, 2006, 7, pp.169. ⟨10.1186/1471-2105-7-169⟩
Journal articles inserm-00080444v1

Chromatin-to-nucleoprotamine transition is controlled by the histone H2B variant TH2B.

Emilie Montellier , Fayçal Boussouar , Sophie Rousseaux , Kai Zhang , Thierry Buchou et al.
Genes and Development, 2013, 27 (15), pp.1680-92
Journal articles hal-01322388v1
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Conservation of Alternative Polyadenylation Patterns in Mammalian genes.

Takeshi Ara , Fabrice Lopez , William Ritchie , Philippe Benech , Daniel Gautheret et al.
BMC Genomics, 2006, 7, pp.189. ⟨10.1186/1471-2164-7-189⟩
Journal articles inserm-00089585v1

The disparate nature of "intergenic" polyadenylation sites

F. Lopez , S. Granjeaud , D. Gautheret
RNA (New York, N.Y.), 2006, 12, p 1794-1801
Journal articles hal-00105073v1

ASTD: The Alternative Splicing and Transcript Diversity database.

Gautier Koscielny , Vincent Le Texier , Chellappa Gopalakrishnan , Vasudev Kumanduri , Jean-Jack Riethoven et al.
Genomics / Physiol Genomics, 2009, 93 (3), pp.213-20. ⟨10.1016/j.ygeno.2008.11.003⟩
Journal articles hal-00529496v1

Nucleolin Promotes Heat Shock-Associated Translation of VEGF-D to Promote Tumor Lymphangiogenesis

F. Morfoisse , F. Tatin , F. Hantelys , A. Adoue , A.-C. Helfer et al.
Cancer Research, 2016, 76 (15), pp.4394-4405. ⟨10.1158/0008-5472.CAN-15-3140⟩
Journal articles hal-02294493v1

The JEM-EUSO mission: An introduction

J. Adams , S. Ahmad , J.-N. Albert , D. Allard , L. Anchordoqui et al.
Experimental Astronomy, 2015, 40 (1), pp.3-17. ⟨10.1007/s10686-015-9482-x⟩
Journal articles hal-02478688v1
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Differential repression of alternative transcripts: a screen for miRNA targets.

Matthieu Legendre , William Ritchie , Fabrice Lopez , Daniel Gautheret
PLoS Computational Biology, 2006, 2, pp.e43. ⟨10.1371/journal.pcbi.0020043⟩
Journal articles inserm-00080130v1
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TranscriptomeBrowser 3.0 : introducing a new compendium of molecular interactions and a new visualization tool for the study of gene regulatory networks.

Cyrille Lepoivre , Aurélie Bergon , Fabrice Lopez , Narayanan Perumal , Catherine Nguyen et al.
BMC Bioinformatics, 2012, 13 (1), pp.19. ⟨10.1186/1471-2105-13-19⟩
Journal articles inserm-00676438v1
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ReMap 2020: a database of regulatory regions from an integrative analysis of Human and Arabidopsis DNA-binding sequencing experiments

Jeanne Chèneby , Zacharie Ménétrier , Martin Mestdagh , Thomas Rosnet , Allyssa Douida et al.
Nucleic Acids Research, 2020, ⟨10.1093/nar/gkz945⟩
Journal articles hal-02351736v1

Bromodomain-dependent stage-specific male genome programming by Brdt: Brdt: a master regulator of spermatogenesis

Jonathan Gaucher , Fayçal Boussouar , Emilie Montellier , Sandrine Curtet , Thierry Buchou et al.
EMBO Journal, 2012, 31 (19), pp.3809 - 3820. ⟨10.1038/emboj.2012.233⟩
Journal articles hal-03388049v1
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Analyse des conditions de lumière sur un site d'accident nocturne en milieu urbain

Marie Claude Montel , Paul Verny , Joël Magnin , Fabrice Lopez
Carnets d'accidentologie, 2016, 2016, pp.25-44
Journal articles hal-01459286v1
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Introducing the novel Cytoscape app TimeNexus to analyze time-series data using temporal MultiLayer Networks (tMLNs)

Michaël Pierrelée , Ana Reynders , Fabrice Lopez , Aziz Moqrich , Laurent Tichit et al.
Scientific Reports, 2021, 11 (1), ⟨10.1038/s41598-021-93128-5⟩
Journal articles hal-03358832v1

A Positive Feed-forward Loop Associating EGR1 and PDGFA Promotes Proliferation and Self-renewal in Glioblastoma Stem Cells

Fabrice Lopez , Philipe Paquis , Fabien Almairac , Denys Fontaine , Nathalie Baeza-Kallee et al.
Journal of Biological Chemistry, 2016, 291 (20), pp.10684-10699. ⟨10.1074/jbc.M116.720698⟩
Journal articles hal-01460121v1