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Tapping wheat diversity to cope with climate change

Etienne Paux
Plant & Animal Genome XXVIII, Jan 2020, San DIego, United States
Conference papers hal-03084318v1
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A strategy to assemble a reference sequence of the 1 Gb wheat chromosome 3B

Frédéric Choulet , Sébastien Theil , Josquin Daron , Natasha Marie Glover , Nicolas N. Guilhot , et al.
TGAC/ESF-LESC workshop, Strategies for de novo assemblies of complex crop genomes, Genome Analysis Centre (TGAC). Norwich, GBR., Oct 2012, Norwich, United Kingdom
Conference papers hal-02809032v1
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Deep transcriptome sequencing provides new insights into the structural and functional organization of the wheat genome

Lise Pingault , Frédéric Choulet , Adriana A. Alberti , Natasha Marie Glover , Patrick Wincker , et al.
Genome Biology, 2015, 16 (1), n.p. ⟨10.1186/s13059-015-0601-9⟩
Journal articles hal-02635440v1

High-resolution analysis of a QTL for resistance to Stagonospora nodorum glume blotch in wheat reveals presence of two distinct resistance loci in the target interval

Margarita Shatalina , Monika Messmer , Catherine C. Feuillet , Fabio Mascher , Etienne Paux , et al.
TAG Theoretical and Applied Genetics, 2014, 127 (3), pp.573-586. ⟨10.1007/s00122-013-2240-4⟩
Journal articles hal-02633712v1

Cracking the wheat code – one giant leap for science, one small step for agriculture

Etienne Paux
Plant Genomics in China XIX, Aug 2018, Chengdu, China
Conference papers hal-02786731v1

Whole-genome prediction of reaction norms to environmental stress in bread wheat (Triticum aestivum L.) by genomic random regression

Delphine Ly , Sylvie Huet , Arnaud Gauffreteau , Renaud Rincent , Gaetan Touzy , et al.
Field Crops Research, 2018, 216, pp.32-41. ⟨10.1016/j.fcr.2017.08.020⟩
Journal articles hal-02626053v1

How to approach complex genomes: the case of wheat and the IWGSC

Etienne Paux
Genomics for Research and Molecular Diagnostics, Oct 2011, Lodi, Italy
Conference papers hal-03087275v1
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Small-scale gene duplications played a major role in the recent evolution of wheat chromosome 3B

Natasha Marie Glover , Josquin Daron , Lise Pingault , Klaas Vandepoele , Etienne Paux , et al.
Genome Biology, 2015, 16 (188), ⟨10.1186/s13059-015-0754-6⟩
Journal articles hal-01244498v1

Transcript profiling of a xylem vs phloem cDNA subtractive library identifies new genes expressed during xylogenesis in Eucalyptus

C. Foucart , Nathalie Ladouce , Hélène San Clemente , Jacqueline Grima Pettenati , Pierre Sivadon , et al.
New Phytologist, 2006, 170 (4), pp.739-752. ⟨10.1111/j.1469-8137.2006.01705.x⟩
Journal articles hal-01565049v1
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High Resolution Melting and Insertion Site-Based Polymorphism Markers for Wheat Variability Analysis and Candidate Genes Selection at Drought and Heat MQTL Loci

Rosa Mérida-García , Sergio Gálvez , Etienne Paux , Gabriel Dorado , Laura Pascual , et al.
Agronomy, 2020, 10 (9), pp.1294. ⟨10.3390/agronomy10091294⟩
Journal articles hal-03048066v1

Fat element-a new marker for chromosome and genome analysis in the Triticeae

Ekaterina D Badaeva , Svyatoslav A Zoshchuk , Etienne Paux , Georges Gay , Natalia V Zoshchuk , et al.
Chromosome Research, 2010, 18 (6), pp.697-709. ⟨10.1007/s10577-010-9151-x⟩
Journal articles istex hal-01154008v1
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Long-read and chromosome-scale assembly of the hexaploid wheat genome achieves high resolution for research and breeding

Jean-Marc Aury , Stefan Engelen , Benjamin Istace , Cécile Monat , Pauline Lasserre-Zuber , et al.
GigaScience, 2022, 11, pp.1-18. ⟨10.1093/gigascience/giac034⟩
Journal articles hal-03658639v1

Combining sequencing and genotyping for efficient genomic studies in wheat

Etienne Paux
International Wheat Innovation Workshop, Institut National de Recherche Agronomique (INRA). UMR Génétique Diversité et Ecophysiologie des Céréales (1095)., Nov 2015, Clermont-Ferrand, France. n. p
Conference papers hal-02795891v1

Transcript profiling of Eucalyptus xylem genes during tension wood formation

Etienne Paux , Víctor Carocha , Cristina Marques , António Mendes de Sousa , Nuno Borralho , et al.
New Phytologist, 2005, 167 (1), pp.89-100. ⟨10.1111/j.1469-8137.2005.01396.x⟩
Journal articles hal-02917741v1
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Evolutionary history of Methyltransferase 1 genes in hexaploid wheat

Mélanie Thomas , Lise Pingault , Axel Poulet , Jorge Duarte , Mickaël Throude , et al.
BMC Genomics, 2014, 13, ⟨10.1186/1471-2229-13-209⟩
Journal articles inserm-01229485v1
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The physical map of wheat chromosome 1BS provides insights into its gene space organization and evolution

Dina Raats , Zeev Frenkel , Tamar Krugman , Itay Dodek , Hanan Sela , et al.
Genome Biology, 2013, 14 (12), ⟨10.1186/gb-2013-14-12-r138⟩
Journal articles hal-02643661v1
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CNVmap: a method and software to detect and map copy number variants from segregation data

Matthieu Falque , Kamel Jebreen , Etienne Paux , Carsten Knaak , Sofiane Mezmouk , et al.
Genetics, 2020, 214 (3), pp.561-576. ⟨10.1534/genetics.119.302881⟩
Journal articles hal-02570414v1

Training population optimization for genomic selection improves the predictive ability of a costly measure in bread wheat, the gliadin to glutenin ratio

Pierre Lemeunier , Etienne Paux , Selver Babi , Jérôme Auzanneau , Ellen Goudemand-Dugué , et al.
Euphytica, 2022, 218 (8), ⟨10.1007/s10681-022-03062-4⟩
Journal articles hal-03740380v1
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A first survey of the rye (Secale cereale) genome composition through BAC end sequencing of the short arm of chromosome 1R

Jan J. Bartos , Etienne Paux , Robert R. Kofler , Miroslava M. Havránková , David D. Kopecký , et al.
BMC Plant Biology, 2008, 8 (95), 12 p. ⟨10.1186/1471-2229-8-95⟩
Journal articles hal-00964153v1
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Towards sequencing the 1 Gb wheat chromosome 3B

Frédéric Choulet , Etienne Paux , Philippe Leroy , Pierre Sourdille , Stéphane Schlub , et al.
1. Workshop of StatSeq COST Action TD0801, Oct 2009, Barcelona, Spain
Conference papers hal-02818225v1
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Towards a reference sequence of the 1 Gb wheat chromosome 3B

Frédéric Choulet , Sébastien Theil , Adriana A. Alberti , Valérie Barbe , Sophie Mangenot , et al.
16. Annual Advances in Genome Biology and Technology (AGBT), Feb 2012, Marco Island, Floride, United States
Conference papers hal-02807639v1

A glimpse into the impossible: Chromosome-based physical mapping of the giant bread wheat genome

Etienne Paux
TritiGen COST Action, Sep 2008, Albena, Bulgaria
Conference papers hal-03087298v1

Genome interplay in the grain transcriptome of hexaploid bread wheat

Matthias Pfeifer , Karl G. Kugler , Simen R. Sandve , Bujie Zhan , Heidi Rudi , et al.
Science, 2014, 345 (6194), pp.287-287. ⟨10.1126/science.1250091⟩
Journal articles hal-02889033v1

Long-read and chromosome-scale assembly of the hexaploid wheat genome achieves high resolution for research and breeding

Jean-Marc Aury , Stefan Engelen , Benjamin Istace , Cécile Monat , Pauline Lasserre-Zuber , et al.
GigaScience, 2022, 11, ⟨10.1093/gigascience/giac034⟩
Journal articles hal-04198283v1
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High throughput SNP discovery and genotyping in hexaploid wheat

Hélène Rimbert , Benoît Darrier , Julien Navarro , Jonathan Kitt , Frédéric Choulet , et al.
PLoS ONE, 2018, 13 (1), pp.1-19. ⟨10.1371/journal.pone.0186329⟩
Journal articles hal-02628543v1

Genetic diversity and linkage disequilibrium studies on a 3.1-Mb genomic region of chromosome 3B in European and Asian bread wheat (Triticum aestivum L.) populations

C.Y. C.Y. Hao , Marie-Reine M.-R. Perretant , Frédéric Choulet , L.F. L.F. Wang , Etienne Paux , et al.
TAG Theoretical and Applied Genetics, 2010, 121 (7), pp.1209-1225. ⟨10.1007/s00122-010-1382-x⟩
Journal articles istex hal-00964128v1

BAC-derived markers for assaying the stem rust resistance gene, Sr2, in wheat breeding programs

M. D. M. D. Mcneil , R. R. Kota , Etienne Paux , D. D. Dunn , R. R. Mclean , et al.
Molecular Breeding, 2008, 22 (1), pp.15-24. ⟨10.1007/s11032-007-9152-4⟩
Journal articles istex hal-00964225v1
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Impact of transposable elements on genome structure and evolution in bread wheat

Thomas Wicker , Heidrun Gundlach , Manuel Spannagl , Cristobal Uauy , Philippa Borrill , et al.
Genome Biology, 2018, 19 (1), ⟨10.1186/s13059-018-1479-0⟩
Journal articles hal-02624812v1

Insertion Site-Based Polymorphism markers open new perspectives for genome saturation and marker-assisted selection in wheat

Etienne Paux
Third International Conference on Plant Molecular Breeding, Sep 2010, Beijing, China
Conference papers hal-03087282v1

Insertion Site-Based Polymorphism markers open new perspectives for wheat genome saturation

Etienne Paux
Plant & Animal Genome XVIII, Jan 2010, San Diego, United States
Conference papers hal-03087289v1