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Prédictions bioinformatiques des propriétés des domaines de reconnaissance peptidique.

Emmanuelle Becker
Informatique [cs]. Université Pierre et Marie Curie - Paris VI, 2007. Français. ⟨NNT : ⟩
Theses tel-00553471v1
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MicroRNA signatures in genetic frontotemporal dementia and amyotrophic lateral sclerosis

Virgilio Kmetzsch , Morwena Latouche , Dario Saracino , Daisy Rinaldi , Agnès Camuzat et al.
Annals of Clinical and Translational Neurology, 2022, pp.1-14. ⟨10.1002/acn3.51674⟩
Journal articles hal-03826747v1

Toxicité fœtale de l’ibuprofène et du paracétamol sur le développement rénal : étude sur culture organotypique de reins fœtaux humains.

Alain Michel , S. Leverrier-Penna , Emmanuelle Becker , Nathalie Dejucq-Rainsford , Cécile Vigneau et al.
Deuxième congrès de la Société francophone de néphrologie dialyse et transplantation (SFNDT), Oct 2017, Nice, France
Poster communications hal-02439300v1
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PAX2GRAPHML: a Python library for large-scale regulation network analysis using BIOPAX

François Moreews , Hugo Simon , Anne Siegel , Florence Gondret , Emmanuelle Becker et al.
Bioinformatics, 2021, 37 (24), pp.4889-4891. ⟨10.1093/bioinformatics/btab441⟩
Journal articles hal-03265223v1

Exposure of human fetal kidneys to mild analgesics interferes with early nephrogenesis

Sabrina Leverrier-Penna , Alain Michel , Laetitia L Lecante , Nathalie Costet , Antonio Suglia et al.
FASEB Journal, 2021, 35 (7), pp.e21718. ⟨10.1096/fj.202100050R⟩
Journal articles hal-03282508v1
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TOXsIgN: a cross-species repository for toxicogenomic signatures

Thomas A. Darde , Pierre Gaudriault , Rémi Béranger , Clement Lancien , Annaelle Caillarec-Joly et al.
Bioinformatics, 2018, 34 (12), pp.2116-2122. ⟨10.1093/bioinformatics/bty040⟩
Journal articles hal-01863047v1

The histone deacetylase Rpd3/Sin3/Ume6 complex represses an acetate-inducible isoform of VTH2 in fermenting budding yeast cells.

Igor Stuparevic , Emmanuelle Becker , Michael J Law , Michael Primig
FEBS Letters, 2015, 589 (8), pp.924-932. ⟨10.1016/j.febslet.2015.02.022⟩
Journal articles hal-01122118v1

Structural basis for the interaction of Asf1 with histone H3 and its functional implications

Florence Mousson , Aurélie Lautrette , Jean-Yves Thuret , Morgane Agez , Régis Courbeyrette et al.
Proceedings of the National Academy of Sciences of the United States of America, 2005, 102, pp.5975 - 5980. ⟨10.1073/pnas.0500149102⟩
Journal articles cea-01744427v1
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The ReproGenomics Viewer: an integrative cross-species toolbox for the reproductive science community.

Thomas A Darde , Olivier Sallou , Emmanuelle Becker , Bertrand Evrard , Cyril Monjoeaud et al.
Nucleic Acids Research, 2015, 43 (W1), pp.8. ⟨10.1093/nar/gkv345⟩
Journal articles hal-01146120v1
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Seminal SIV in chronically-infected cynomolgus macaques is dominated by virus originating from multiple genital organs

Laurent Houzet , Marcos Pérez-Losada , Giulia Matusali , Claire Deleage , Nathalie Dereuddre-Bosquet et al.
Journal of Virology, 2018, 92 (14), pp.e00133-18. ⟨10.1128/JVI.00133-18⟩
Journal articles hal-01795804v1
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Functional integrative levels in the human interactome recapitulate organ organization.

Ouissem Souiai , Emmanuelle Becker , Carlos Prieto , Alia Benkahla , Javier de Las Rivas et al.
PLoS ONE, 2011, 6 (7), pp.e22051. ⟨10.1371/journal.pone.0022051⟩
Journal articles hal-00877687v1
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Clinicopathological characteristics of ROS1- and RET-rearranged NSCLC in caucasian patients. Data from a cohort of 713 non-squamous NSCLC lacking KRAS/EGFR/HER2/BRAF/PIK3CA/ALK alterations

Frédéric Dugay , Francisco Llamas-Gutierrez , Marjory Gournay , Sarah Médane , Francois Mazet et al.
Oncotarget, 2017, 8 (32), pp.53336-53351. ⟨10.18632/oncotarget.18408⟩
Journal articles hal-01578586v1
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Identification of causal signature using omics data integration and network reasoning-based analysis

Méline Wery , Emmanuelle Becker , Franck Auge , Charles Bettembourg , Olivier Dameron et al.
JOBIM 2019 - Journées Ouvertes Biologie, Informatique et Mathématiques, Jul 2019, Nantes, France. pp.1
Poster communications hal-02193860v1
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Towards a reproducible interactome: semantic-based detection of redundancies to unify protein-protein interaction databases

Marc Melkonian , Camille Juigné , Olivier Dameron , Gwenaël Rabut , Emmanuelle Becker et al.
Bioinformatics, 2022, pp.1-7. ⟨10.1093/bioinformatics/btac013⟩
Journal articles hal-03522989v1
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Ndt80 activates the meiotic ORC1 transcript isoform and SMA2 via a bi-directional middle sporulation element in Saccharomyces cerevisiae

Bingning Xie , J. Horecka , A. Chu , R.W. Davis , Emmanuelle Becker et al.
RNA Biology, 2016, 13 (9), pp.772--782. ⟨10.1080/15476286.2016.1191738⟩
Journal articles hal-01367153v1
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Highlight on semantic web technologies are effective to remove redundancies from protein-protein interaction databases and define reproducible interactomes

Marc Melkonian , Camille Juigné , Olivier Dameron , Gwenaël Rabut , Emmanuelle Becker et al.
Journées Ouvertes en Biologie, Informatique et Mathématiques (JOBIM), Jul 2022, Rennes, France. pp.146, ⟨10.1093/bioinformatics/btac013⟩
Conference papers hal-03877219v1
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Plasma microRNA signature in presymptomatic and symptomatic subjects with C9orf72-associated frontotemporal dementia and amyotrophic lateral sclerosis

Virgilio Kmetzsch , Vincent Anquetil , Dario Saracino , Daisy Rinaldi , Agnès Camuzat et al.
Journal of Neurology, Neurosurgery and Psychiatry, 2020, 92 (5), pp.485-493. ⟨10.1136/jnnp-2020-324647⟩
Journal articles hal-03046771v1

The conserved histone deacetylase Rpd3 and the DNA binding regulator Ume6 repress BOI1's meiotic transcript isoform during vegetative growth in Saccharomyces cerevisiae.

Yuchen Liu , Igor Stuparevic , Bingning Xie , Emmanuelle Becker , Michael J Law et al.
Molecular Microbiology, 2015, 96 (4), pp.861-874. ⟨10.1111/mmi.12976⟩
Journal articles hal-01122120v1

The M-FUNC Project or how to detect multifunctional proteins with interactome networks ?

Emmanuelle Becker
European Conferences on Computational Biology, 2008, Cagliari, Italy
Conference papers hal-00669370v1

Système de classes chevauchantes pour la recherche de protéines multifonctionnelles

Emmanuelle Becker
Journées Ouvertes en Biologie Informatique Mathématiques, 2009, Nantes, France
Conference papers hal-00669369v1
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The anti-cancer drug 5-fluorouracil affects cell cycle regulators and potential regulatory long non-coding RNAs in yeast

Bingning Xie , Emmanuelle Becker , Igor Stuparevic , Maxime Wery , Ugo Szachnowski et al.
RNA Biology, 2019, 16 (6), pp.727-741. ⟨10.1080/15476286.2019.1581596⟩
Journal articles hal-02061954v1
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A method to identify target molecules and extract the corresponding graph of interactions in BioPAX

Camille Juigné , Olivier Dameron , Florence Gondret , Emmanuelle Becker
BBCC2022 - Bioinformatics and Computational Biology Conference, Dec 2022, Virtual, Italy
Conference papers hal-03876091v1
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Disease progression score estimation from multimodal imaging and microRNA data using supervised variational autoencoders

Virgilio Kmetzsch , Emmanuelle Becker , Dario Saracino , Daisy Rinaldi , Agnes Camuzat et al.
IEEE Journal of Biomedical and Health Informatics, In press, pp.1-12. ⟨10.1109/JBHI.2022.3208517⟩
Journal articles hal-03789357v1
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The epigenetic processes of meiosis in male mice are broadly affected by the widely used herbicide atrazine

Aurore Gély-Pernot , Chunxiang Hao , Emmanuelle Becker , Igor Stuparevic , Christine Kervarrec et al.
BMC Genomics, 2015, 16 (1), pp.885. ⟨10.1186/s12864-015-2095-y⟩
Journal articles hal-01225493v1

Multifunctional proteins revealed by overlapping clustering in protein interaction network.

Emmanuelle Becker , Benoît Robisson , Charles E Chapple , Alain Guénoche , Christine Brun et al.
Bioinformatics, 2012, 28 (1), pp.84-90. ⟨10.1093/bioinformatics/btr621⟩
Journal articles hal-00877694v1

Protein-protein interaction networks and tissue specificity

Emmanuelle Becker
European Conferences on Computational Biology, 2008, Cagliari, Italy
Conference papers hal-00669397v1
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Ibuprofen is deleterious for the development of first trimester human fetal ovary ex vivo

S. Leverrier-Penna , R.T. Mitchell , Emmanuelle Becker , L. Lecante , M. Ben Maamar et al.
Human Reproduction, 2018, 33 (3), pp.482-493. ⟨10.1093/humrep/dex383⟩
Journal articles hal-01739999v1
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Exposure to the widely used herbicide atrazine results in deregulation of global tissue-specific RNA transcription in the third generation and is associated with a global decrease of histone trimethylation in mice.

Chunxiang Hao , Aurore Gély-Pernot , Christine Kervarrec , Melissa Boudjema , Emmanuelle Becker et al.
Nucleic Acids Research, 2016, 44, pp.9784-9802. ⟨10.1093/nar/gkw840⟩
Journal articles hal-01477213v1

Global alterations of the transcriptional landscape during yeast growth and development in the absence of Ume6-dependent chromatin modification

Aurélie Lardenois , Emmanuelle Becker , Thomas Walther , Michael J. Law , Bingning Xie et al.
Molecular Genetics and Genomics, 2015, 290 (5), pp.2031-2046. ⟨10.1007/s00438-015-1051-5⟩
Journal articles hal-01151619v1
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Detection and correction of non-conformities and redundancies in complexes of molecules in BioPAX

Camille Juigné , Olivier Dameron , François Moreews , Florence Gondret , Emmanuelle Becker et al.
Journées Ouvertes en Biologie, Informatique et Mathématiques (JOBIM), Jul 2022, Rennes, France. pp.1-25
Conference papers hal-03752473v1