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apex : phylogenetics with multiple genes

Thibaut Jombart , Frederick Archer , Klaus Schliep , Zhian Kamvar , Rebecca Harris , et al.
Molecular Ecology Resources, 2017, 17 (1), pp.19 - 26. ⟨10.1111/1755-0998.12567⟩
Journal articles hal-01821911v1
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The evolutionary radiation of Arvicolinae rodents (voles and lemmings): relative contribution of nuclear and mitochondrial DNA phylogenies

Thomas Galewski , Marie-Ka Tilak , Sophie Sanchez , Pascale Chevret , Emmanuel Paradis , et al.
BMC Evolutionary Biology, 2006, 6, pp.80. ⟨10.1186/1471-2148-6-80⟩
Journal articles halsde-00324005v1
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Random phylogenies and the distribution of branching times

Emmanuel Paradis
Journal of Theoretical Biology, 2015, 387, pp.39 - 45. ⟨10.1016/j.jtbi.2015.09.005⟩
Journal articles hal-01821944v1

Phylogeography of Toxoplasma gondii points to a South American origin.

Emilie Bertranpetit , Thibaut Jombard , Emmanuel Paradis , Hilda Pena , Jitender P Dubey , et al.
13th International Conference on Molecular Epidemiology and Evolutionary Genetics of Infectious Diseases MEEGID XIII, May 2016, Anvers, Belgium
Poster communications hal-02326825v1
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Linking genomics and population genetics with R

Emmanuel Paradis , Thierry Gosselin , Jérome Goudet , Thibaut Jombart , Klaus Schliep
Molecular Ecology Resources, 2017, 17 (1), pp.54 - 66. ⟨10.1111/1755-0998.12577⟩
Journal articles hal-01821977v1
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A predictive model of the impact of urbanization on bacterial loads in watersheds

Chantima Piyapong , Nitcha Chamroensaksri , Sayam Aroonsrimorakot , Lawan Eyosawat , Surasak Khankhum , et al.
Journal of Cleaner Production, 2021, 297, pp.126704. ⟨10.1016/j.jclepro.2021.126704⟩
Journal articles ird-03699134v1
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Statistical analysis of diversification with species traits

Emmanuel Paradis
Evolution - International Journal of Organic Evolution, 2005, 59 (1), pp.1 - 12. ⟨10.1111/j.0014-3820.2005.tb00889.x⟩
Journal articles hal-01822136v1

Investigation of a Low-Cost Sequential Plating Based Process for Pb-free Bumping

A. El Amrani , E. Paradis , D. Danovitch , D. Drouin
2018 7th Electronic System-Integration Technology Conference (ESTC), Sep 2018, Dresden, Germany. pp.1-5, ⟨10.1109/ESTC.2018.8546369⟩
Conference papers hal-02074096v1
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Quantifying Variation in Speciation and Extinction Rates With Clade Data

Emmanuel Paradis , Pablo A Tedesco , Bernard Hugueny
Evolution - International Journal of Organic Evolution, 2013, 67 (12), pp.3617 - 3627. ⟨10.1111/evo.12256⟩
Journal articles istex hal-01821922v1
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pegas: an R package for population genetics with an integrated-modular approach

E. Paradis
Bioinformatics, 2010, 26 (3), pp.419 - 420. ⟨10.1093/bioinformatics/btp696⟩
Journal articles istex hal-01822130v1

Evaluating alternative explanations for an association of extinction risk and evolutionary uniqueness in multiple insular lineages

Ben Warren , Oskar Hagen , Florian Gerber , Christophe Thébaud , Emmanuel Paradis , et al.
Evolution - International Journal of Organic Evolution, 2018, 72 (10), pp.2005 - 2024. ⟨10.1111/evo.13582⟩
Journal articles ird-01920133v1
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Modelling large-scale dispersal distances

Emmanuel Paradis , Stephen R Baillie , William J Sutherland
Ecological Modelling, 2002, 151 (2-3), pp.279-292. ⟨10.1016/S0304-3800(01)00487-2⟩
Journal articles ird-02063958v1
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A thirteen-million-year divergence between two lineages of Indonesian coelacanths

Kadar Kadarusman , Hagi Yulia Sugeha , Laurent Pouyaud , Régis Hocdé , Intanurfemi Hismayasari , et al.
Scientific Reports, 2020, 10 (1), ⟨10.1038/s41598-019-57042-1⟩
Journal articles ird-02438220v1
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Can extinction rates be estimated without fossils?

Emmanuel Paradis
Journal of Theoretical Biology, 2004, 229 (1), pp.19-30. ⟨10.1016/j.jtbi.2004.02.018⟩
Journal articles ird-02063037v1

Une analyse phylogéographique indique une origine sud-américaine de la population de Toxoplasma gondii.

Emilie Bertranpetit , Thibaut Jombart , Emmanuel Paradis , Hilda Pena , Jitender P Dubey , et al.
Congrès National de la Société Française de Parasitologie (SFP), Mar 2016, Grenoble, France
Poster communications hal-02326924v1

Ecological Correlates and Evolutionary Divergence in the Skull of Turtles: A Geometric Morphometric Assessment

Julien Claude , Peter Pritchard , Hayan Tong , Emmanuel Paradis , Jean-Christophe Auffray
Systematic Biology, 2004, 53 (6), pp.937-952. ⟨10.1080/10635150490889498⟩
Journal articles halsde-00303546v1

Seed Size Variation of Trees and Lianas in a Tropical Forest of Southeast Asia: Allometry, Phylogeny, and Seed Trait - Plant Functional Trait Relationships

Pornwiwan Pothasin , Emmanuel Paradis , Warren Brockelman , Anuttara Nathalang , Thantiyapawn Khemrugka , et al.
Frontiers in Plant Science, 2022, 13, ⟨10.3389/fpls.2022.852167⟩
Journal articles ird-03699157v1
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Shift in diversification in sister-clade comparisons: a more powerful test

Emmanuel Paradis
Evolution - International Journal of Organic Evolution, 2012, 66 (1), pp.288 - 295. ⟨10.1111/j.1558-5646.2011.01429.x⟩
Journal articles istex hal-01822124v1

Extant diversity of bryophytes emerged from successive post-Mesozoic diversification bursts

B. Laenen , B. Shaw , Henri Schneider , B. Goffinet , E. Paradis , et al.
Nature Communications, 2014, 5 (1), ⟨10.1038/ncomms6134⟩
Journal articles hal-01821908v1

Heterogenous Bump Metallurgy Through a Sequential Plating Based Process

A. El Amrani , E. Paradis , D. Danovitch , D. Drouin
2020 IEEE 70th Electronic Components and Technology Conference (ECTC), Jun 2020, Orlando, United States. pp.702-709, ⟨10.1109/ECTC32862.2020.00116⟩
Conference papers hal-02919186v1
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Capture-recapture study of a population of the Mediterranean Pine vole (Microtus duodecimcostatus) in Southern France

G. Guédon , E. Paradis , H Croset
Mammalian Biology: Zeitschrift für Säugetierkunde, 1992, 57 (6), pp.364-372
Journal articles ird-02061421v1

Chemical composition of anodically formed p-typeporous gaas in hf-based electrolyte

A.Y. Bioud , A. Boucherif , A. Belarouci , E. Paradis , D. Drouin , et al.
Porous Semiconductors - Science and Technology, Mar 2016, Tarragona, Spain
Conference papers hal-02079239v1

Phylogeography of Toxoplasma gondii points to a South American origin.

Emilie Bertranpetit , Thibaut Jombart , Emmanuel Paradis , Hilda Pena , Jitender Dubey , et al.
Infection, Genetics and Evolution, 2016, 48, pp.150-155. ⟨10.1016/j.meegid.2016.12.020⟩
Journal articles hal-01502248v1
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Explaining global-scale diversification patterns in actinopterygian fishes

Pablo A Tedesco , Emmanuel Paradis , Christian Lévêque , Bernard Hugueny
Journal of Biogeography, 2017, 44 (4), pp.773 - 783. ⟨10.1111/jbi.12905⟩
Journal articles ird-01832665v1
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Tempo and rates of diversification in the South American cichlid genus Apistogramma (Teleostei: Perciformes: Cichlidae)

Christelle Tougard , Carmen R García Dávila , Uwe Römer , Fabrice Duponchelle , Frédérique Cerqueira , et al.
PLoS ONE, 2017, 12 (9), pp.e0182618. ⟨10.1371/journal.pone.0182618⟩
Journal articles hal-01593655v1
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APE: analyses of phylogenetics and evolution in R language

Emmanuel Paradis , Julien Claude , Korbinian Strimmer
Bioinformatics, 2004, 20 (2), pp.289-290. ⟨10.1093/bioinformatics/btg412⟩
Journal articles ird-01887318v1
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Towards an integrated ecosystem of R packages for the analysis of population genetic data

Emmanuel Paradis , Thierry Gosselin , Niklaus J. Grünwald , Thibaut Jombart , Stéphanie Manel , et al.
Molecular Ecology Resources, 2017, 17 (1), pp.1-4. ⟨10.1111/1755-0998.12636⟩
Journal articles hal-01605538v1
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Analysis of comparative data using generalized estimating equations

Julien Claude , Emmanuel Paradis
Journal of Theoretical Biology, 2002, 218 (2), pp.175-185. ⟨10.1006/jtbi.2002.3066⟩
Journal articles ird-02063041v1
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Interactions between spatial and temporal scales in the evolution of dispersal rate

Emmanuel Paradis
Evolutionary Ecology, 1998, 12 (2), pp.235-244. ⟨10.1023/A:1006539930788⟩
Journal articles ird-02062888v1
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Dynamique des populations du campagnol provençal (Microtus duodecimcostatus)

Emmanuel Paradis
Bulletin De La Société Zoologique De France, 1996, 121 (3), pp.289-293
Journal articles ird-02062399v1