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Allosteric inhibition of adenylyl cyclase type 5 by G-protein: a molecular dynamics study

Elisa Frezza , Tina-Méryl Amans , Juliette Martin
2020
Preprints, Working Papers, ... hal-02988423v1

Left or right cholesterics? A matter of helix handedness and curliness

Elisa Frezza , Alberta Ferrarini , Hima Bindu Kolli , Achille Giacometti , Giorgio Cinacchi et al.
Physical Chemistry Chemical Physics, 2014, 16 (30), pp.16225-16232. ⟨10.1039/C4CP01816H⟩
Journal articles hal-03332036v1

Molecular structure and elastic properties of thermotropic liquid crystals: Integrated molecular dynamics—Statistical mechanical theory vs molecular field approach

M. Ilk Capar , A. Nar , A. Ferrarini , Elisa Frezza , C. Greco et al.
Journal of Chemical Physics, 2013, 138 (11), pp.114902. ⟨10.1063/1.4794920⟩
Journal articles hal-03192221v1

Right- and left-handed liquid crystal assemblies of oligonucleotides: phase chirality as a reporter of a change in non-chiral interactions?

Elisa Frezza , Fabio Tombolato , Alberta Ferrarini
Soft Matter, 2011, 7 (19), pp.9291. ⟨10.1039/C1SM05472D⟩
Journal articles hal-03192197v1

The isotropic-to-nematic phase transition in hard helices: Theory and simulation

Elisa Frezza , Alberta Ferrarini , Hima Bindu Kolli , Achille Giacometti , Giorgio Cinacchi et al.
Journal of Chemical Physics, 2013, 138 (16), pp.164906. ⟨10.1063/1.4802005⟩
Journal articles hal-03192225v1

Biomimetic Nanoarchitectures for Light Harvesting: Self-Assembly of Pyropheophorbide-Peptide Conjugates

Elena Meneghin , Francesca Biscaglia , Andrea Volpato , Luca Bolzonello , Danilo Pedron et al.
Journal of Physical Chemistry Letters, 2020, 11 (19), pp.7972-7980. ⟨10.1021/acs.jpclett.0c02138⟩
Journal articles hal-03189824v1

Endoglin Is an Endothelial Housekeeper against Inflammation: Insight in ECFC-Related Permeability through LIMK/Cofilin Pathway

Elisa Rossi , Alexandre Kauskot , François Saller , Elisa Frezza , Sonia Poirault-Chassac et al.
International Journal of Molecular Sciences, 2021, 22 (16), pp.8837. ⟨10.3390/ijms22168837⟩
Journal articles hal-03388849v1

A molecular dynamics study of adenylyl cyclase: The impact of ATP and G-protein binding

Elisa Frezza , Juliette Martin , Richard Lavery
PLoS ONE, 2018, 13 (4), pp.e0196207. ⟨10.1371/journal.pone.0196207⟩
Journal articles hal-02344727v1

Biasing RNA Coarse-Grained Folding Simulations with Small-Angle X-ray Scattering Data

Liuba Mazzanti , Lina Alferkh , Elisa Frezza , Samuela Pasquali
Journal of Chemical Theory and Computation, 2021, 17 (10), pp.6509-6521. ⟨10.1021/acs.jctc.1c00441⟩
Journal articles hal-03408552v1

Internal Coordinate Normal Mode Analysis: A Strategy To Predict Protein Conformational Transitions

Elisa Frezza , Richard Lavery
Journal of Physical Chemistry B, 2019, 123 (6), pp.1294-1301. ⟨10.1021/acs.jpcb.8b11913⟩
Journal articles hal-03189829v1

Self-assembly of hard helices: a rich and unconventional polymorphism

Hima Bindu Kolli , Elisa Frezza , Giorgio Cinacchi , Alberta Ferrarini , Achille Giacometti et al.
Soft Matter, 2014, 10 (41), pp.8171-8187. ⟨10.1039/C4SM01305K⟩
Journal articles hal-03332030v1
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Progress Toward SHAPE Constrained Computational Prediction of Tertiary Interactions in RNA Structure

Grégoire de Bisschop , Delphine Allouche , Elisa Frezza , Benoît Masquida , Yann Ponty et al.
Non-Coding RNA, 2021, 7 (4), pp.71. ⟨10.3390/ncrna7040071⟩
Journal articles hal-03413594v1

Biasing RNA coarse-grained folding simulations with Small–Angle X–ray Scattering (SAXS) data

Liuba Mazzanti , Lina Alferkh , Elisa Frezza , Samuela Pasquali
2021
Preprints, Working Papers, ... hal-03189821v1

A Bit Stickier, a Bit Slower, a Lot Stiffer: Specific vs. Nonspecific Binding of Gal4 to DNA

Thomas Carzaniga , Giuliano Zanchetta , Elisa Frezza , Luca Casiraghi , Luka Vanjur et al.
International Journal of Molecular Sciences, 2021, 22 (8), pp.3813. ⟨10.3390/ijms22083813⟩
Journal articles hal-03192237v1

Induced forms of α2-macroglobulin neutralize heparin and direct oral anticoagulant effects

G. Jourdi , J. Abdoul , V. Siguret , X. Decleves , Elisa Frezza et al.
International Journal of Biological Macromolecules, 2021, 184, pp.209-217. ⟨10.1016/j.ijbiomac.2021.06.058⟩
Journal articles hal-03283834v1
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Antibiotic export by MexB multidrug efflux transporter is allosterically controlled by a MexA-OprM chaperone-like complex

Marie Glavier , Dhenesh Puvanendran , Dimitri Salvador , Marion Decossas , Gilles Phan et al.
Nature Communications, 2020, 11 (1), ⟨10.1038/s41467-020-18770-5⟩
Journal articles hal-03006629v1

The interplay of configuration and conformation in helical perylenequinones: Insights from chirality induction in liquid crystals and calculations

Elisa Frezza , Silvia Pieraccini , Stefania Mazzini , Alberta Ferrarini , Gian Piero Spada et al.
Beilstein Journal of Organic Chemistry, 2012, 8, pp.155-163. ⟨10.3762/bjoc.8.16⟩
Journal articles hal-03192212v1

Crucial role of molecular curvature for the bend elastic and flexoelectric properties of liquid crystals: mesogenic dimers as a case study

Mirko Cestari , Elisa Frezza , Alberta Ferrarini , Geoffrey Luckhurst
Journal of Materials Chemistry, 2011, 21 (33), pp.12303. ⟨10.1039/C1JM12233A⟩
Journal articles hal-03192200v1

Coarse-grained dynamic RNA titration simulations

Samuela Pasquali , Elisa Frezza , F. Barroso da Silva
Interface Focus, 2019, 9 (3), pp.20180066. ⟨10.1098/rsfs.2018.0066⟩
Journal articles hal-03189827v1

Hierarchical Propagation of Chirality through Reversible Polymerization: The Cholesteric Phase of DNA Oligomers

Cristiano de Michele , Giuliano Zanchetta , Tommaso Bellini , Elisa Frezza , Alberta Ferrarini et al.
ACS Macro Letters, 2016, 5 (2), pp.208-212. ⟨10.1021/acsmacrolett.5b00579⟩
Journal articles hal-03332535v1

Theory and Simulation Studies of Self-Assembly of Helical Particles

Giorgio Cinacchi , Alberta Ferrarini , Elisa Frezza , Achille Giacometti , Hima Bindu Kolli et al.
Self-Assembling Systems, 13 (4), John Wiley & Sons, Ltd, pp.53-84, 2016, ⟨10.1002/9781119113171.ch3⟩
Book sections hal-03189832v1

Linker dependent chirality of solvent induced self-assembled structures of porphyrin–α-helical peptide conjugates

Francesca Biscaglia , Elisa Frezza , Enrico Zurlo , Marina Gobbo
Organic & Biomolecular Chemistry, 2016, 14 (40), pp.9568-9577. ⟨10.1039/C6OB01633B⟩
Journal articles hal-03189834v1
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Allosteric Inhibition of Adenylyl Cyclase Type 5 by G-Protein: A Molecular Dynamics Study

Elisa Frezza , Tina-Méryl Amans , Juliette Martin
Biomolecules, 2020, 10 (9), pp.1330. ⟨10.3390/biom10091330⟩
Journal articles hal-03106057v1

Density functional theory of nematic elasticity: softening from the polar order

Paolo de Gregorio , Elisa Frezza , Cristina Greco , Alberta Ferrarini
Soft Matter, 2016, 12 (23), pp.5188-5198. ⟨10.1039/C6SM00624H⟩
Journal articles hal-03408429v1

From the Molecular Structure to Spectroscopic and Material Properties: Computational Investigation of a Bent-Core Nematic Liquid Crystal

Cristina Greco , Alberto Marini , Elisa Frezza , Alberta Ferrarini
ChemPhysChem, 2014, 15 (7), pp.1336-1344. ⟨10.1002/cphc.201301030⟩
Journal articles istex hal-03332019v1
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The interplay between molecular flexibility and RNA chemical probing reactivities analyzed at the nucleotide level via an extensive molecular dynamics study

Elisa Frezza , Antoine Courban , Delphine M Allouche , Bruno Sargueil , Samuela Pasquali et al.
Methods, 2019, 162-163, pp.108-127. ⟨10.1016/j.ymeth.2019.05.021⟩
Journal articles hal-02387476v1

Allosteric Inhibition of Adenylyl Cyclase Type 5 by G-Protein: A Molecular Dynamics Study

Elisa Frezza , Tina-Méryl Amans , Juliette Martin
Biomolecules, 2020, 10 (9), pp.1330. ⟨10.3390/BIOM10091330⟩
Journal articles hal-02988410v1

Internal Normal Mode Analysis (iNMA) Applied to Protein Conformational Flexibility

Elisa Frezza , Richard Lavery
Journal of Chemical Theory and Computation, 2015, 11 (11), pp.5503-5512. ⟨10.1021/acs.jctc.5b00724⟩
Journal articles hal-03332373v1
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Using normal mode analysis on protein structural models. How far can we go on our predictions?

Nuria Cirauqui Diaz , Elisa Frezza , Juliette Martin
Proteins - Structure, Function and Bioinformatics, 2021, 89 (5), pp.531-543. ⟨10.1002/prot.26037⟩
Journal articles hal-03106071v1
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Multiscale molecular simulations to investigate adenylyl cyclase‐based signaling in the brain

Siri van Keulen , Juliette Martin , Francesco Colizzi , Elisa Frezza , Daniel Trpevski et al.
WIREs Computational Molecular Science, 2022, ⟨10.1002/wcms.1623⟩
Journal articles hal-03695888v1