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Decompensated cirrhosis and microbiome interpretation : Qin et al. reply

Lanjuan Li , Nan Qin , Emmanuelle E. Le Chatelier , Edi Prifti , Stanislav Dusko Ehrlich et al.
Nature, 2015, 525 (7569), pp.E2-E3. ⟨10.1038/nature14852⟩
Journal articles hal-02637875v1
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Increased basement membrane components in adipose tissue during obesity: links with TGFβ and metabolic phenotypes

Sophie Reggio , Christine Rouault , Christine Poitou , Jean-Christophe Bichet , Edi Prifti et al.
The Journal of clinical endocrinology and metabolism, 2016, pp.jc20154304. ⟨10.1210/jc.2015-4304⟩
Journal articles hal-01311833v1
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Protein supplementation during an energy-restricted diet induces visceral fat loss and gut microbiota amino acid metabolism activation: a randomized trial

Pierre Bel Lassen , Eugeni Belda , Edi Prifti , Maria Carlota Dao , Florian Specque et al.
Scientific Reports, 2021, 11 (1), pp.15620. ⟨10.1038/s41598-021-94916-9⟩
Journal articles hal-03342418v1
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Capturing the most wanted taxa through cross-sample correlations

Mathieu Almeida , Mihai Pop , Emmanuelle E. Le Chatelier , Edi Prifti , Nicolas N. Pons et al.
ISME Journal, 2016, 10 (10), pp.2459-2467. ⟨10.1038/ismej.2016.35⟩
Journal articles hal-02634020v1
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The new science of metagenomics and the challenges of its use in both developed and developing countries

Edi Prifti , Jean-Daniel Zucker
2013
Preprints, Working Papers, ... hal-00821359v1
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Microbiome and metabolome features of the cardiometabolic disease spectrum

Sebastien Fromentin , Sofia Forslund , Kanta Chechi , Judith Aron-Wisnewsky , Rima Chakaroun et al.
Nature Medicine, 2022, 28 (2), pp.303-314. ⟨10.1038/s41591-022-01688-4⟩
Journal articles pasteur-03692581v1
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Echocardiography and renin-aldosterone interplay as predictors of death in COVID-19

Joe-Elie Salem , Nadjib Hammoudi , Bruno Pinna , Stephane Ederhy , Antonin Lamazière et al.
Archives of cardiovascular diseases, In press, ⟨10.1016/j.acvd.2021.11.006⟩
Journal articles hal-03572401v1
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Effect of congenital adrenal hyperplasia treated by glucocorticoids on plasma metabolome: a machine-learning-based analysis

Lee S Nguyen , Edi Prifti , Farid Ichou , Monique Leban , Christian Funck-Brentano et al.
Scientific Reports, 2020, 10 (1), pp.8859. ⟨10.1038/s41598-020-65897-y⟩
Journal articles inserm-02872323v1
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Dietary modulation of the gut microbiota – a randomised controlled trial in obese postmenopausal women

Lena Brahe , Emmanuelle Le Chatelier , Edi Prifti , Nicolas Pons , Sean Kennedy et al.
British Journal of Nutrition, 2015, 114 (3), pp.406-417. ⟨10.1017/S0007114515001786⟩
Journal articles pasteur-02552248v1

Human gut microbes impact host serum metabolome and insulin sensitivity

Helle Krogh Pedersen , Valborg Gudmundsdottir , Henrik Bjørn Nielsen , Tuulia Hyotylainen , Trine Nielsen et al.
Nature, 2016, 535 (12), ⟨10.1038/nature18646⟩
Journal articles hal-01594855v1
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Construction et validation d’un premier catalogue de gènes du microbiome intestinal chez le porc

Jordi Estellé , Yuliaxis Ramayo Caldas , Nicolas Pons , Emmanuelle Le Chatelier , Edi Prifti et al.
50. Journées de la Recherche Porcine en France, 2018, NA, France
Conference papers hal-02285612v1
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Akkermansia muciniphila abundance is lower in severe obesity, but its increased level after bariatric surgery is not associated with metabolic health improvement

Maria Carlota Dao , Eugeni Belda , Edi Prifti , Amandine Everard , Brandon D Kayser et al.
AJP - Endocrinology and Metabolism, 2019, 317 (3), pp.E446-E459. ⟨10.1152/ajpendo.00140.2019⟩
Journal articles hal-02305445v1

Dietary intervention impact on gut microbial gene richness

Aurelie A. Cotillard , Sean S. Kennedy , Ling Chun L. C. Kong , Edi E. Prifti , Nicolas N. Pons et al.
Nature, 2013, 500, pp.585-588. ⟨10.1038/nature12480⟩
Journal articles hal-01001543v1

An integrated catalog of reference genes in the human gut microbiome

Junhua Li , Huijue Jia , Xianghang Cai , Huanzi Zhong , Qiang Feng et al.
Nature Biotechnology, 2014, 32, pp.834-841. ⟨10.1038/nbt.2942⟩
Journal articles hal-01195478v1
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Deep learning analysis of ECG for risk prediction of drug-induced arrhythmias and diagnosis of long QT syndrome

Edi Prifti , Ahmad Fall , Giovanni Davogustto , Alfredo Pulini , Isabelle Denjoy et al.
European Heart Journal, 2021, 42 (38), pp.3948-3961. ⟨10.1093/eurheartj/ehab588⟩
Journal articles hal-03477972v1
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Disease Classification in Metagenomics with 2D Embeddings and Deep Learning

Thanh Hai Nguyen , Edi Prifti , Yann Chevaleyre , Nataliya Sokolovska , Jean-Daniel Zucker et al.
La Conférence sur l'Apprentissage automatique (CAp), Jun 2018, Rouen, France
Conference papers hal-01819205v1

Quantifying Diet-Induced Metabolic Changes of the Human Gut Microbiome

Saeed Shoaie , Pouyan Ghaffari , Petia Kovatcheva-Datchary , Adil Mardinoglu , Partho Sen et al.
Cell Metabolism, 2015, 22 (2), pp.320-331. ⟨10.1016/j.cmet.2015.07.001⟩
Journal articles hal-02634319v1
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Effect of Genome and Environment on Metabolic and Inflammatory Profiles

Marina Sirota , Gonneke Willemsen , Purnima Sundar , Steven Pitts , Shobha Potluri et al.
PLoS ONE, 2015, 10 (4), pp.e0120898. ⟨10.1371/journal.pone.0120898⟩
Journal articles pasteur-02552107v1

Alterations of the human gut microbiome in liver cirrhosis

Nan Qin , Fengling Yang , Ang Li , Edi Prifti , Yanfei Chen et al.
Nature, 2014, 513 (7516), pp.59-64. ⟨10.1038/nature13568⟩
Journal articles hal-02639870v1
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Serum lipidomics reveals early differential effects of gastric bypass compared to banding on phospholipids and sphingolipids independent of differences in weight loss

Brandon D. Kayser , Marie Lhomme , Maria Carlota Dao , Farid Ichou , Jean-Luc Bouillot et al.
International Journal of Obesity, 2017, ⟨10.1038/ijo.2017.63⟩
Journal articles hal-01497688v1

MetaOMineR: a quantitative metagenomics data analyses pipeline

Edi Prifti , Emmanuelle E. Le Chatelier
2014
Software hal-02800484v1
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Gut microbiota changes after metabolic surgery in adult diabetic patients with mild obesity: a randomised controlled trial

Eva Lau , Eugeni Belda , Paul Picq , Davide Carvalho , Manuel Ferreira-Magalhães et al.
Diabetology & Metabolic Syndrome, 2021, 13 (1), pp.56. ⟨10.1186/s13098-021-00672-1⟩
Journal articles hal-03235902v1
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Phosphatidylglycerols are induced by gut dysbiosis and inflammation, and favorably modulate adipose tissue remodeling in obesity

Brandon D Kayser , Marie Lhomme , Edi Prifti , Carla da Cunha , Florian Marquet et al.
FASEB Journal, 2019, 33 (4), pp.4741-4754. ⟨10.1096/fj.201801897R⟩
Journal articles hal-02135899v1
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Altered subcutaneous adipose tissue parameters after switching ART-controlled HIV+ patients to raltegravir/maraviroc

Jean-Philippe Bastard , Véronique Pelloux , Rohia Alili , Soraya Fellahi , Judith Aron-Wisnewsky et al.
AIDS, 2021, Publish Ahead of Print, ⟨10.1097/QAD.0000000000002900⟩
Journal articles hal-03200113v1
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Spectral consensus strategy for accurate reconstruction of large biological networks

Séverine Affeldt , Nataliya Sokolovska , Edi Prifti , Jean-Daniel Zucker
BMC Bioinformatics, 2016, 17 (S16), pp.85 - 97. ⟨10.1186/s12859-016-1308-y⟩
Journal articles hal-01420840v1

Akkermansia muciniphila and improved metabolic health during a dietary intervention in obesity: relationship with gut microbiome richness and ecology

Maria Carlota Dao , Amandine Everard , Judith Aron-Wisnewsky , Nataliya Sokolovska , Edi Prifti et al.
Gut, 2016, 65 (3), pp.426-436. ⟨10.1136/gutjnl-2014-308778⟩
Journal articles hal-02639895v1
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Exploring Semi-Quantitative Metagenomic Studies Using Oxford Nanopore Sequencing: A Computational and Experimental Protocol

Rohia Alili , Eugeni Belda , Phuong Le , Thierry Wirth , Jean-Daniel Zucker et al.
Genes, 2021, 12 (10), pp.1496. ⟨10.3390/genes12101496⟩
Journal articles hal-03405404v1
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Intestinal alteration of α-gustducin and sweet taste signaling pathway in metabolic diseases is partly rescued after weight loss and diabetes remission Running Head: Intestinal α-gustducin in metabolic diseases

Léa Le Gléau , Christine Rouault , Céline Osinski , Edi Prifti , Hédi Antoine Soula et al.
AJP - Endocrinology and Metabolism, 2021, 321 (3), pp.E417-E432. ⟨10.1152/ajpendo.00071.2021⟩
Journal articles hal-03356634v1

Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes

H Bjørn Nielsen , Mathieu Almeida , Agnieszka Sierakowska Juncker , Simon Rasmussen , Junhua Li et al.
Nature Biotechnology, 2014, 32, pp.822-828. ⟨10.1038/nbt.2939⟩
Journal articles hal-01195477v1

Major microbiota dysbiosis in severe obesity: fate after bariatric surgery

Judith Aron-Wisnewsky , Edi Prifti , Eugeni Belda , Farid Ichou , Brandon D Kayser et al.
Gut, 2019, 68 (1), pp.70-82. ⟨10.1136/gutjnl-2018-316103⟩
Journal articles hal-02629250v1