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GOTIT: A laboratory application software for optimizing multi‐criteria species‐based research

Florian Malard , Philippe Grison , Louis Duchemin , Lara Konecny-Dupré , Tristan Lefébure , et al.
Methods in Ecology and Evolution, 2020, 11, pp.159-167. ⟨10.1111/2041-210X.13307⟩
Journal articles hal-02329439v1

Robust identification of potential habitats of a rare demersal species (blackspot seabream) in the Northeast Atlantic

Lola de Cubber , Verena Trenkel , Guzman Diez , Juan Gil-Herrera , Ana Maria Novoa Pabon , et al.
Ecological Modelling, 2023, 477, pp.110255. ⟨10.1016/j.ecolmodel.2022.110255⟩
Journal articles hal-04028923v1
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Approches macro-écologique et phylogéographique pour démêler facteurs et processus responsables des patrons de biodiversité aquatique souterraine en Europe

David Eme
Biodiversité. Université Claude Bernard - Lyon I, 2014. Français. ⟨NNT : 2014LYO10134⟩
Theses tel-01203349v1

Functional beta diversity of New Zealand fishes: Characterising morphological turnover along depth and latitude gradients, with derivation of functional bioregions

Elisabeth Myers , David Eme , Libby Liggins , Euan Harvey , Clive Roberts , et al.
Austral Ecology, 2021, 46 (6), pp.965-981. ⟨10.1111/aec.13078⟩
Journal articles hal-03616055v1

High functional diversity in deep‐sea fish communities and increasing intraspecific trait variation with increasing latitude

Elisabeth Myers , Marti Anderson , Libby Liggins , Euan Harvey , Clive Roberts , et al.
Ecology and Evolution, 2021, 11 (15), pp.10600-10612. ⟨10.1002/ece3.7871⟩
Journal articles hal-03616057v1

Fundamental research questions in subterranean biology

Stefano Mammola , Isabel Amorim , Maria Bichuette , Paulo Borges , Naowarat Cheeptham , et al.
Biological Reviews, 2020, 95 (6), pp.1855-1872. ⟨10.1111/brv.12642⟩
Journal articles hal-03066110v1

Geomorphic influence on intraspecific genetic differentiation and diversity along hyporheic corridors

Florian Malard , Cécile Capderrey , Benjamin Churcheward , David Eme , Bernard Kaufmann , et al.
Freshwater Biology, 2017, 62 (12), pp.1955 - 1970. ⟨10.1111/fwb.13040⟩
Journal articles hal-01723507v1

A conservation roadmap for the subterranean biome

J. Judson Wynne , Francis Howarth , Stefano Mammola , Rodrigo Lopes Ferreira , Pedro Cardoso , et al.
Conservation Letters, 2021, 14 (5), ⟨10.1111/conl.12834⟩
Journal articles hal-03616068v1

Disentangling the effects of land use and geo-climatic factors on diversity in European freshwater ecosystems

Christian K. Feld , Sebastian Birk , David Eme , Michael Gerisch , Daniel Hering , et al.
Ecological Indicators, 2016, 60, pp.71 - 83. ⟨10.1016/j.ecolind.2015.06.024⟩
Journal articles hal-01714424v1
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Ecology-based evaluation of groundwater ecosystems under intensive agriculture: A combination of community analysis and sentinel exposure

Pierre Marmonier , Chafik Maazouzi , Nicole Baran , Simon Blanchet , Amy Ritter , et al.
Science of the Total Environment, 2018, 613-614, pp.1353-1366. ⟨10.1016/j.scitotenv.2017.09.191⟩
Journal articles hal-01637292v1
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Comparing environmental DNA metabarcoding and underwater visual census to monitor tropical reef fishes

Andrea Polanco Fernández , Virginie Marques , Fabian Fopp , Jean‐baptiste Juhel , Giomar Helena Borrero-Pérez , et al.
Environmental DNA, 2021, 3 (1), pp.142-156. ⟨10.1002/edn3.140⟩
Journal articles hal-03810224v1
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Contrasting Phylogeographic Patterns of Mitochondrial and Genome-Wide Variation in the Groundwater Amphipod Crangonyx islandicus That Survived the Ice Age in Iceland

David Eme , Kristen M Westfall , Brynja Matthíasardóttir , Bjarni Kristófer Kristjánsson , Snæbjörn Pálsson
Diversity, 2023, 15 (1), pp.88. ⟨10.3390/d15010088⟩
Journal articles hal-03946769v1
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A multispecies, intraspecific functional traits data set on fish species from the Bay of Biscay, France

Romane Rozanski , David Eme , Anne Boiron Leroy , Marta M Rufino , Camille Albouy
Ecology, 2023, pp.e3924. ⟨10.1002/ecy.3924⟩
Journal articles hal-03946746v1
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Contrasted spatio-temporal changes in the demersal fish assemblages and the dominance of the environment vs fishing pressure, in the Bay of Biscay and Celtic Sea

David Eme , Marta M Rufino , Verena M Trenkel , Youen Vermard , Pascal Laffargue , et al.
Progress in Oceanography, 2022, 204, pp.102788. ⟨10.1016/j.pocean.2022.102788⟩
Journal articles hal-03810193v1

Geographic variation in range size and beta diversity of groundwater crustaceans: insights from habitats with low thermal seasonality

M. Zagmajster , David Eme , Cene Fiser , Diana M.P. Galassi , Pierre Marmonier , et al.
Global Ecology and Biogeography, 2014, 23 (10), pp.1135-1145. ⟨10.1111/Geb.12200⟩
Journal articles istex hal-01113188v1
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Disentangling the components of coastal fish biodiversity in southern Brittany by applying an environmental DNA approach

Romane Rozanski , Verena M. Trenkel , Pascal Lorance , Alice Valentini , Tony Dejean , et al.
Environmental DNA, 2023, 4 (4), pp.920-939. ⟨10.1002/edn3.305⟩
Journal articles hal-03946704v1

Integrating phylogeography, physiology, and habitat modelling to explore species range déterminants

David Eme , Florian Malard , Céline Colson-Proch , Pauline Jean , Sébastien Calvignac , et al.
Journal of Biogeography, 2014, 41, pp.687-699. ⟨10.1111/jbi.12237⟩
Journal articles istex halsde-00968144v1

An integrated pathway for building regional phylogenies for ecological studies

David Eme , Marti Anderson , Carl Struthers , Clive Roberts , Libby Liggins
Global Ecology and Biogeography, 2019, 28 (12), pp.1899-1911. ⟨10.1111/geb.12986⟩
Journal articles hal-03616047v1

Do cryptic species matter in macroecology? Sequencing European groundwater crustaceans yields smaller ranges but does not challenge biodiversity determinants

David Eme , Maja Zagmajster , Teo Delić , Cene Fišer , Jean-François Flot , et al.
Ecography, 2018, 41 (2), pp.424 - 436. ⟨10.1111/ecog.02683⟩
Journal articles hal-01731403v1
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Phylogenetic measures reveal eco‐evolutionary drivers of biodiversity along a depth gradient

David Eme , M. Anderson , E. Myers , C. Roberts , L. Liggins
Ecography, 2020, 43 (5), pp.689-702. ⟨10.1111/ecog.04836⟩
Journal articles hal-03616036v1

Multi-causality and spatial non-stationarity in the determinants of groundwater crustacean diversity in Europe

David Eme , Maja Zagmajster , Cene Fiser , Diana M.P. Galassi , Pierre Marmonier , et al.
Ecography, 2015, 38, pp.531-540. ⟨10.1111/ecog.01092⟩
Journal articles istex hal-01323920v1
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Subterranean species inventory in the molecular era

Florian Malard , Héloïse Verdier , Lara Konecny-Dupré , David Eme , Christophe J Douady , et al.
Karstologia, 2022
Journal articles hal-03810304v1
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Comparing the performance of 12S mitochondrial primers for fish environmental DNA across ecosystems

Andrea Polanco F. , Eilísh Richards , Benjamin Flück , Alice Valentini , Florian Altermatt , et al.
Environmental DNA, 2021, 3 (6), pp.1113-1127. ⟨10.1002/edn3.232⟩
Journal articles hal-03616064v1
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Less effective selection leads to larger genomes

Tristan Lefébure , Claire Morvan , Florian Malard , Clémentine François , Lara Konecny-Dupré , et al.
Genome Research, 2017, 27, pp.1016-1028. ⟨10.1101/gr.212589.116⟩
Journal articles hal-01544879v2
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Bedrock radioactivity influences the rate and spectrum of mutation

Nathanaëlle Saclier , Patrick Chardon , Florian Malard , Lara Konecny-Dupré , David Eme , et al.
eLife, 2020, 9, pp.e56830. ⟨10.7554/eLife.56830⟩
Journal articles hal-03051267v1

Bayesian phylogeographic inferences reveal contrasting colonization dynamics among European groundwater isopods

David Eme , Florian Malard , Lara Konecny-Dupré , Tristan Lefébure , Christophe Jean Douady
Molecular Ecology, 2013, 22, pp.5685-5699. ⟨10.1111/mec.12520⟩
Journal articles istex halsde-00921300v1

Changes in key traits versus depth and latitude suggest energy‐efficient locomotion, opportunistic feeding and light lead to adaptive morphologies of marine fishes

Elisabeth Myers , Marti Anderson , David Eme , Libby Liggins , Clive Roberts
Journal of Animal Ecology, 2019, 89 (2), pp.309-322. ⟨10.1111/1365-2656.13131⟩
Journal articles hal-03616052v1

Brazilian cave heritage under siege

Rodrigo Lopes Ferreira , Enrico Bernard , Francisco William da Cruz Júnior , Luis Beethoven Piló , Allan Calux , et al.
Science, 2022, 375 (6586), pp.1238-1239. ⟨10.1126/science.abo1973⟩
Journal articles hal-03616075v1
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Unique and shared effects of local and catchment predictors over distribution of hyporheic organisms: does the valley rule the stream?

Samuel Mouron , David Eme , Arnaud Bellec , Mélanie Bertrand , Stefano Mammola , et al.
Ecography, 2022, 2022 (5), pp.e06099. ⟨10.1111/ecog.06099⟩
Journal articles hal-03616026v1

Mitochondrial genomes reveal the extinct Hippidion as an outgroup to all living equids

Clio Der Sarkissian , Julia Vilstrup , Mikkel Schubert , Andaine Seguin-Orlando , David Eme , et al.
Biology Letters, 2015, 11 (20141058), pp.1-5. ⟨10.1098/rsbl.2014.1058⟩
Journal articles hal-01323150v1