|
|
Physique statistique du repliement et de la dénaturation des acides nucléiques
Daniel Jost
Biophysique [physics.bio-ph]. Ecole normale supérieure de lyon - ENS LYON, 2010. Français. ⟨NNT : ⟩
Theses
tel-00544804v1
|
Share
Gmail
Facebook
Twitter
LinkedIn
More
|
|
|
3DPolyS-LE: an accessible simulation framework to model the interplay between chromatin and loop extrusion
Todor Gitchev
,
Gabriel Zala
,
Peter Meister
,
Daniel Jost
Bioinformatics, In press
Journal articles
hal-03797993v1
|
Share
Gmail
Facebook
Twitter
LinkedIn
More
|
|
|
Painters in chromatin: a unified quantitative framework to systematically characterize epigenome regulation and memory
Amith Abdulla
,
Cédric Vaillant
,
Daniel Jost
Journal articles
hal-03797965v1
|
Share
Gmail
Facebook
Twitter
LinkedIn
More
|
|
|
Epigenomics in 3D: importance of long-range spreading and specific interactions in epigenomic maintenance
Daniel Jost
,
Cédric Vaillant
Nucleic Acids Research, 2018, 46 (5), pp.2252-2264
Journal articles
hal-01976597v1
|
Share
Gmail
Facebook
Twitter
LinkedIn
More
|
|
|
Temperature Dependence of the DNA Double Helix at the Nanoscale: Structure, Elasticity, and Fluctuations
Sam Meyer
,
Daniel Jost
,
Nikos Theodorakopoulos
,
Michel Peyrard
,
Richard Lavery
et al.
Biophysical Journal, 2013, 105 (8), pp.1904-1914
Journal articles
hal-01976546v1
|
Share
Gmail
Facebook
Twitter
LinkedIn
More
|
|
|
Bifurcation in epigenetics: Implications in development, proliferation, and diseases
Daniel Jost
Physical Review E : Statistical, Nonlinear, and Soft Matter Physics, 2014, 89 (1)
Journal articles
hal-01976531v1
|
Share
Gmail
Facebook
Twitter
LinkedIn
More
|
|
|
Global chromatin conformation differences in the Drosophila dosage compensated chromosome X
Koustav Pal
,
Mattia Forcato
,
Daniel Jost
,
Thomas Sexton
,
Cédric Vaillant
et al.
Journal articles
hal-02386022v1
|
Share
Gmail
Facebook
Twitter
LinkedIn
More
|
|
|
Modeling the Functional Coupling between 3D Chromatin Organization and Epigenome
Cédric Vaillant
,
Daniel Jost
Modeling the 3D conformation of genomes, 1, CRC Press, pp.21-56, 2019, 9781315144009
Book sections
hal-02273692v1
|
Share
Gmail
Facebook
Twitter
LinkedIn
More
|
|
|
Effect of replication on epigenetic memory and consequences on gene transcription
Mehari Zerihun
,
Cédric Vaillant
,
Daniel Jost
Physical Biology, 2015, 12 (2), pp.026007
Journal articles
hal-01976588v1
|
Share
Gmail
Facebook
Twitter
LinkedIn
More
|
|
|
Polymer modelling unveils the roles of heterochromatin and nucleolar organizing regions in shaping 3D genome organization in Arabidopsis thaliana
Marco Di Stefano
,
Hans-Wilhelm Nutzmann
,
Marc A Marti-Renom
,
Daniel Jost
2020
Preprints, Working Papers, ...
hal-03012893v1
|
Share
Gmail
Facebook
Twitter
LinkedIn
More
|
|
|
Modeling the functional coupling between 3D chromatin organization and epigenome
Cédric Vaillant
,
Daniel Jost
Modeling the 3D conformation of genomes, 2019
Book sections
hal-02386050v1
|
Share
Gmail
Facebook
Twitter
LinkedIn
More
|
|
|
Quantitative effect of target translation on small RNA efficacy reveals a novel mode of interaction
Anat Lavi-Itzkovitz
,
Neil Peterman
,
Daniel Jost
,
Erel Levine
Nucleic Acids Research, 2014, 42 (19), pp.12200-12211
Journal articles
hal-01976585v1
|
Share
Gmail
Facebook
Twitter
LinkedIn
More
|
|
|
Exploiting Single-Cell Quantitative Data to Map Genetic Variants Having Probabilistic Effects
Florent Chuffart
,
Magali Richard
,
Daniel Jost
,
Claire Burny
,
Hélène Duplus-Bottin
et al.
PLoS Genetics, 2016, 12 (8), pp.e1006213
Journal articles
hal-01976590v1
|
Share
Gmail
Facebook
Twitter
LinkedIn
More
|
|
|
How epigenome drives chromatin folding and dynamics, insights from efficient coarse-grained models of chromosomes
Surya Ghosh
,
Daniel Jost
PLoS Computational Biology, 2018, 14 (5), pp.e1006159
Journal articles
hal-01976607v1
|
Share
Gmail
Facebook
Twitter
LinkedIn
More
|
|
|
Live imaging and biophysical modeling support a button-based mechanism of somatic homolog pairing in Drosophila
Myron Child
,
Jack R Bateman
,
Amir Jahangiri
,
Armando Reimer
,
Nicholas Lammers
et al.
2020
Preprints, Working Papers, ...
hal-03012922v1
|
Share
Gmail
Facebook
Twitter
LinkedIn
More
|
|
|
A Unified Poland-Scheraga Model of Oligo- and Polynucleotide DNA Melting: Salt Effects and Predictive Power
Daniel Jost
,
Ralf Everaers
Biophysical Journal, 2009, 96 (3), pp.1056-1067
Journal articles
hal-01976506v1
|
Share
Gmail
Facebook
Twitter
LinkedIn
More
|
|
|
Twist-DNA: computing base-pair and bubble opening probabilities in genomic superhelical DNA
Daniel Jost
Bioinformatics, 2013, 29 (19), pp.2479-2481
Journal articles
hal-01976602v1
|
Share
Gmail
Facebook
Twitter
LinkedIn
More
|
|
|
Differential spatial and structural organization of the X chromosome underlies dosage compensation in C. elegans
Rahul Sharma
,
Daniel Jost
,
Jop Kind
,
Georgina Gómez-Saldivar
,
Bas van Steensel
et al.
Journal articles
hal-01976528v1
|
Share
Gmail
Facebook
Twitter
LinkedIn
More
|
|
|
The folding landscape of the epigenome
Juan Olarte-Plata
,
Noelle Haddad
,
Cédric Vaillant
,
Daniel Jost
Physical Biology, 2016, 13 (2), pp.026001
Journal articles
hal-01976579v1
|
Share
Gmail
Facebook
Twitter
LinkedIn
More
|
|
|
Small RNA biology is systems biology
Daniel Jost
,
Andrzej Nowojewski
,
Erel Levine
BMB Reports, 2011, 44 (1), pp.11-21
Journal articles
hal-01976509v1
|
Share
Gmail
Facebook
Twitter
LinkedIn
More
|
|
|
IC-Finder: inferring robustly the hierarchical organization of chromatin folding
Noelle Haddad
,
Cédric Vaillant
,
Daniel Jost
Journal articles
hal-01976542v1
|
Share
Gmail
Facebook
Twitter
LinkedIn
More
|
|
|
Genome wide application of DNA melting analysis
Daniel Jost
,
Ralf Everaers
Journal of Physics: Condensed Matter, 2009, 21 (3), pp.034108
Journal articles
hal-01976559v1
|
Share
Gmail
Facebook
Twitter
LinkedIn
More
|
|
|
Genome organization via loop extrusion, insights from polymer physics models
Surya Ghosh
,
Daniel Jost
Journal articles
hal-03012763v1
|
Share
Gmail
Facebook
Twitter
LinkedIn
More
|
|
|
Dynamical modeling of the H3K27 epigenetic landscape in mouse embryonic stem cells
Kapil Newar
,
Amith Zafal Abdulla
,
Hossein Salari
,
Eric Fanchon
,
Daniel Jost
et al.
Journal articles
hal-03431877v1
|
Share
Gmail
Facebook
Twitter
LinkedIn
More
|
|
|
Temporal trends in the use of targeted temperature management after cardiac arrest and association with outcome: insights from the Paris Sudden Death Expertise Centre
Jean-Baptiste Lascarrou
,
Florence Dumas
,
Wulfran Bougouin
,
Richard Chocron
,
Frankie Beganton
et al.
Journal articles
inserm-02464708v1
|
Share
Gmail
Facebook
Twitter
LinkedIn
More
|
|
|
Guidelines for cell-type heterogeneity quantification based on a comparative analysis of reference-free DNA methylation deconvolution software
Clémentine Decamps
,
Florian Privé
,
Raphael Bacher
,
Daniel Jost
,
Arthur Waguet
et al.
Journal articles
hal-03012777v1
|
Share
Gmail
Facebook
Twitter
LinkedIn
More
|
|
|
TADs are 3D structural units of higher-order chromosome organization in Drosophila
Quentin Szabo
,
Daniel Jost
,
Jia-Ming Chang
,
Diego Cattoni
,
Giorgio Papadopoulos
et al.
Journal articles
hal-01726709v1
|
Share
Gmail
Facebook
Twitter
LinkedIn
More
|
|
|
Live imaging and biophysical modeling support a button-based mechanism of somatic homolog pairing in Drosophila
Myron Barber Child
,
Jack R Bateman
,
Amir Jahangiri
,
Armando Reimer
,
Nicholas C Lammers
et al.
Journal articles
hal-03431632v1
|
Share
Gmail
Facebook
Twitter
LinkedIn
More
|
|
|
Assigning function to natural allelic variation via dynamic modeling of gene network induction
Magali Richard
,
Florent Chuffart
,
Hélène Duplus‐bottin
,
Fanny Pouyet
,
Martin Spichty
et al.
Journal articles
hal-01976613v1
|
Share
Gmail
Facebook
Twitter
LinkedIn
More
|
|
|
PenDA, a rank-based method for personalized differential analysis: Application to lung cancer
Magali Richard
,
Clémentine Decamps
,
Florent Chuffart
,
Elisabeth Brambilla
,
Sophie Rousseaux
et al.
Journal articles
inserm-02868566v1
|
Share
Gmail
Facebook
Twitter
LinkedIn
More
|