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Tracking Growing Axons by Particle Filtering in 3D+t Fluorescent Two-Photon Microscopy Images

Huei-Fang Yang , Xavier Descombes , Charles Kervrann , Caroline Medioni , Florence Besse et al.
ACCV - Asian Conference on Computer Vision, Nov 2012, Daejeon, South Korea
Conference papers hal-00740966v1
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Lifetime estimation of moving vesicles in frequency-domain fluorescence lifetime imaging microscopy

Philippe Roudot , Charles Kervrann , François Waharte
IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2012, May 2012, Barcelona, Spain. pp.668-671, ⟨10.1109/ISBI.2012.6235636⟩
Conference papers hal-00763790v1
Image document

Generalized Sparse Variation Regularization for Large Fluorescence Image Deconvolution

Hoaï-Nam Nguyen , Vincent Paveau , Cyril Cauchois , Charles Kervrann
2017
Preprints, Working Papers, ... hal-01609810v1

3D motion estimation in 3D light microscopy image sequences: application to cell migration

Sandeep Manandhar , Patrick Bouthemy , Philippe Roudot , Charles Kervrann
QBI 2019 - Quantitative BioImaging Conference, Jan 2019, Rennes, France
Conference papers hal-02424694v1

3D tracking of endocytic events using lattice light sheet microscopy

Cesar Augusto Valades Cruz , Alison Forrester , Christian Wunder , Charles Kervrann , Jean Salamero et al.
QBI 2019 - Quantitative BioImaging Conference, Jan 2019, Rennes, France
Conference papers hal-02424697v1

A simulation and estimation framework for intracellular dynamics and trafficking in video-microscopy and fluorescence imagery

Jérôme Boulanger , Charles Kervrann , Patrick Bouthemy
Medical Image Analysis, 2009, 13 (1), pp.132-142. ⟨10.1016/j.media.2008.06.017⟩
Journal articles hal-02662557v1

Condensed Mitotic Chromosome Structure at Nanometer Resolution Using PALM and EGFP- Histones

Atsushi Matsuda , Lin Shao , Jérôme Boulanger , Charles Kervrann , Peter M. Carlton et al.
PLoS ONE, 2010, 5 (9), pp.e12768. ⟨10.1371/journal.pone.0012768⟩
Journal articles inria-00541020v1

Non-local means filter and novel bayesian approximations for non-local image regularization

Charles Kervrann
SIAM Imaging Science 2010, Society for Insdustrial and Applied Mathematics, Apr 2010, Chicago, United States
Conference papers inria-00541223v1
Image document

Challenges of intracellular visualization using virtual and augmented reality

Cesar Augusto Valades-Cruz , Ludovic Leconte , Gwendal Fouche , Thomas Blanc , Nathan van Hille et al.
Frontiers in Bioinformatics, 2022, 2, ⟨10.3389/fbinf.2022.997082⟩
Journal articles hal-03795781v1
Image document

An adaptive statistical test to detect non Brownian diffusion from particle trajectories

Vincent Briane , Myriam Vimond , Charles Kervrann
ISBI 2016 - IEEE Symposium on Biomedical Imaging, IEEE, Apr 2016, Prague, Czech Republic. pp.1-4
Conference papers hal-01416855v1

A quantitative approach for space-time membrane trafficking orientation

Thierry Pécot , Jérôme Boulanger , Patrick Bouthemy , Sabine Bardin , Jean Salamero et al.
Quantitative BioImaging, Jan 2015, Paris, France
Conference papers hal-01103553v1
Image document

Spatially-variant kernel for optical flow under low signal-to-noise ratios: application to microscopy

Denis Fortun , Noemie Debroux , Charles Kervrann
ICCV Workshop - BioImage Computing (BIC), Oct 2017, Venice, Italy. pp.9, ⟨10.1109/ICCVW.2017.12⟩
Conference papers hal-01575720v1
Image document

Network Tomography-based tracking for intracellular traffic analysis in fluorescence microscopy imaging

Thierry Pecot , Charles Kervrann , Patrick Bouthemy
1st International Conference on Bio-Inspired Systems and Signal Processing, Jan 2008, Funchal, Portugal
Conference papers hal-02752726v1
Image document

A simulation and estimation framework for intracellular dynamics and trafficking in video-microscopy and fluorescence imagery

Jérôme Boulanger , Charles Kervrann , Patrick Bouthemy
Medical Image Analysis, 2008, 13, 132-142Video-microscopy Fluorescence Cellular biology Image sequence modeling Simulation Estimation
Journal articles hal-00794917v1
Image document

The coordination of spindle-positioning forces during the asymmetric division of the C. elegans zygote

Hélène Bouvrais , Laurent Chesneau , Yann Le Cunff , Danielle Fairbrass , Nina Soler et al.
EMBO Reports, 2021, 22 (5), pp.e50770. ⟨10.15252/embr.202050770⟩
Journal articles hal-03000200v1

Classification of diffusion dynamics from particle trajectories

Vincent Briane , Myriam Vimond , Charles Kervrann
QBI - Quantitative BioImaging, Jan 2017, College-Station, United States
Conference papers hal-01575467v1

A detection based framework for systematic analysis of dual color TIRF microscopy

Anatole Chessel , Bertrand Cinquin , François Waharte , Charles Kervrann , Jean Salamero et al.
Focus on Microscopy (FOM'10), Mar 2010, Shangai, China
Conference papers inria-00541107v1

Classification instantanée de mouvements de foules dans des vidéos

Antoine Basset , Patrick Bouthemy , Charles Kervrann
Gretsi - XXIVe Colloque Gretsi - Traitement du Signal et des Images - 2013, Sep 2013, Brest, France
Conference papers hal-00921787v1

Denoising and compensation of the missing wedge in cryo electron tomography

Emmanuel Moebel , Charles Kervrann
16th European Microscopy Congress, European Microscopy Society, Aug 2016, Lyon, France
Conference papers hal-01416801v1
Image document

Test statistique pour détecter les diffusions non browniennes

Vincent Briane , Charles Kervrann , Myriam Vimond
48e Journées de Statistique, SFdS, May 2016, Montpellier, France. pp.1-6
Conference papers hal-01416862v1
Image document

Modélisation et estimation de la diffusion de protéines à l’exocytose dans des séquences d’images de microscopie TIRF

Antoine Basset , Patrick Bouthemy , Jérôme Boulanger , François Waharte , Jean Salamero et al.
Reconnaissance des Formes et l'Intelligence Artificielle (RFIA'16), Association Française de Reconnaissance et d'Interprétation des Formes (AFRIF), Association Française d'Intelligence Artificielle (AFIA), Jun 2016, Clermont-Ferrand, France. pp.1-8
Conference papers hal-01416868v1

Testing independence between two random sets for the analysis of colocalization in bioimaging

Frédéric Lavancier , Thierry Pécot , Liu Zengzhen , Charles Kervrann
Biometrics, 2020, 76 (1), pp.36-46. ⟨10.1111/biom.13115⟩
Journal articles hal-02369555v1
Image document

BioImageIT: Integration of image data-management with analysis

Ludovic Leconte , Sylvain Prigent , Léo Maury , Cesar Augusto Valades Cruz , Jean Salamero et al.
BioImage Informatics 2021 (poster), Nov 2021, Paris, France. pp.1
Conference papers hal-03509440v1
Image document

Deep Learning Improves Macromolecule Identification in 3D Cellular Cryo-Electron Tomograms

Emmanuel Moebel , Antonio Martinez-Sanchez , Lorenz Lamm , Ricardo D Righetto , Wojciech Wietrzynski et al.
Nature Methods, 2021, 18 (11), pp.1386-1394. ⟨10.1038/s41592-021-01275-4⟩
Journal articles hal-03509223v1
Image document

A Monte Carlo framework for denoising and missing wedge reconstruction in cryo-electron tomography

Emmanuel Moebel , Charles Kervrann
Patch-MI 2018 - 4th International Workshop on Patch-based Techniques in Medical Imaging, Sep 2018, Grenade, Spain. pp.28-35, ⟨10.1007/978-3-030-00500-9_4⟩
Conference papers hal-01961938v1
Image document

An overview of diffusion models for intracellular dynamics analysis

Vincent Briane , Myriam Vimond , Charles Kervrann
2018
Preprints, Working Papers, ... hal-01966825v1

Recovery of motion patterns and dominant paths in videos of crowded scenes

Antoine Basset , Patrick Bouthemy , Charles Kervrann
IEEE International Conference on Image Processing, Oct 2014, Paris, France
Conference papers hal-01097357v1
Image document

DCT2net: a DCT-based interpretable shallow CNN method for efficient and fast image denoising

Sébastien Herbreteau , Charles Kervrann
IS 2022 - SIAM Conference on Imaging Science, Mar 2022, Berlin, Germany
Conference papers hal-03926530v1
Image document

Towards a unified view of unsupervised non-local methods for image denoising: the NL-Ridge approach

Sébastien Herbreteau , Charles Kervrann
ICIP 2022 - 29th IEEE International Conference on Image Processing, Oct 2022, Bordeaux, France. pp.3376-3380, ⟨10.1109/ICIP46576.2022.9897992⟩
Conference papers hal-03926888v1
Image document

Sparse denoising and adaptive estimation enhances the resolution and contrast of fluorescence emission difference microscopy based on array detector

Sylvain Prigent , Stéphanie Dutertre , Aurélien Bidaud-Meynard , Giulia Bertolin , Grégoire Michaux et al.
Optics Letters, In press, ⟨10.1364/OL.474883⟩
Journal articles hal-03931575v1