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Comparative sequence analysis of CP12, a small protein involved in the formation of a Calvin cycle complex in photosynthetic organisms

René Groben , Dimitrios Kaloudas , Christine A. Raines , Bernard Offmann , Stephen C. Maberly , et al.
Photosynthesis Research, 2010, 3 (103), pp.183-194
Journal articles hal-00677532v1
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TP de Biochimie (Enzymologie)

Bernard Offmann
Photography. Terre Sainte, France. 2009
Photos medihal-00459241v1
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DoSA: Database of Structural Alignments.

Swapnil Mahajan , Garima Agarwal , Mohammed Iftekhar , Bernard Offmann , Alexandre de Brevern , et al.
Database - The journal of Biological Databases and Curation, 2013, 2013, pp.bat048. ⟨10.1093/database/bat048⟩
Journal articles inserm-00926452v1
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TP de Biochimie (Enzymologie)

Bernard Offmann
Photography. Terre Sainte, France. 2009
Photos medihal-00459242v1
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TP de Biochimie (Enzymologie)

Bernard Offmann
Photography. Terre Sainte, France. 2009
Photos medihal-00459244v1
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TP de Biochimie (Enzymologie)

Bernard Offmann
Photography. Terre Sainte, France. 2009
Photos medihal-00459247v1

Analycys: A database for conservation and conformation of disulphide bonds in homologous protein domains

Ratna R. Thangudu , Priyanka Sharma , N. Srinivasan , Bernard Offmann
Proteins - Structure, Function and Bioinformatics, 2007, 67 (2), pp.255--261. ⟨10.1002/prot.21318⟩
Journal articles istex hal-01198478v1
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PURE: A webserver for the prediction of domains in unassigned regions in proteins

Chilamakuri Cs Reddy , Khader Shameer , Bernard Offmann , Ramanathan Sowdhamini
BMC Bioinformatics, 2008, 9 (1), pp.1-8. ⟨10.1186/1471-2105-9-281⟩
Journal articles hal-01198474v2
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Analysis of loop boundaries using different local structure assignment methods.

Manoj Tyagi , Aurélie Bornot , Bernard Offmann , Alexandre de Brevern
Protein Science, 2009, 18 (9), pp.1869-81. ⟨10.1002/pro.198⟩
Journal articles inserm-00392504v1
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TP de Biochimie (Enzymologie)

Bernard Offmann
Photography. Terre Sainte, France. 2009
Photos medihal-00459243v1

Comparative sequence analysis of CP12, a small protein involved in the formation of a Calvin cycle complex in photosynthetic organisms

R. Groben , D. Kaloudas , C.A. Raines , Bernard Offmann , Stephen C. Maberly , et al.
Photosynthesis Research, 2010, 103 (3), pp.183-194
Journal articles hal-00677735v1
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Protein Block Expert (PBE): a web-based protein structure analysis server using a structural alphabet.

Manoj Tyagi , Priyanka Sharma , C. S. Swamy , Frédéric Cadet , N. Srinivasan , et al.
Nucleic Acids Research, 2006, 34 (Web Server issue), pp.W119-23. ⟨10.1093/nar/gkl199⟩
Journal articles inserm-00133751v1
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TP de Biochimie (Enzymologie)

Bernard Offmann
Photography. Terre Sainte, France. 2009
Photos medihal-00459237v1
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TP de Biochimie (Enzymologie)

Bernard Offmann
Photography. Terre Sainte, France. 2009
Photos medihal-00459246v1

Prediction of enzyme activity: Implementation of the ProSAR method and assessment on experimental dataset from different sources

Magali Berland , Bernard Offmann , Isabelle André , Magali Remaud Simeon , Philippe Charton
2nd symposium Protein Engineering for Biocatalysis, Aug 2012, Greifswald, Germany. , 2012
Poster communications hal-01188006v1

Identification and characterisation of novel atypical odorant binding proteins in the mosquito genomes

Malini Manoharan , Matthieu Ng Fuk Chong , Aurore Vaitinadapoule , E. Frumence , Ramanathan Sowdhamini , et al.
9th European Congress on Computation Biology (ECCB10), Sep 2010, Ghent, Belgium
Conference papers hal-01198469v1

Length Variations amongst Protein Domain Superfamilies and Consequences on Structure and Function

Sankaran Sandhya , Saane Sudha Rani , Barah Pankaj , Madabosse Kande Govind , Bernard Offmann , et al.
PLoS ONE, 2009, 4 (3), pp.e4981. ⟨10.1371/journal.pone.0004981⟩
Journal articles hal-01198473v1
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Systematic search for putative new domain families in Mycoplasma gallisepticum genome

Chilamakuri Cs Reddy , Sane Sudha Rani , Bernard Offmann , R. Sowdhamini
BMC Research Notes, 2010, 3 (1), pp.1--10. ⟨10.1186/1756-0500-3-98⟩
Journal articles hal-01198471v1
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CUSP: an algorithm to distinguish structurally conserved and unconserved regions in protein domain alignments and its application in the study of large length variations

Sankaran Sandhya , Barah Pankaj , Kande Madabosse Govind , Bernard Offmann , Narayanaswamy Srinivasan , et al.
BMC Structural Biology, 2008, 8 (1), pp.1-14. ⟨10.1186/1472-6807-8-28⟩
Journal articles hal-01198475v2
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A substitution matrix for structural alphabet based on structural alignment of homologous proteins and its applications.

Manoj Tyagi , Venkataraman S. Gowri , Narayanaswamy Srinivasan , Alexandre de Brevern , Bernard Offmann
Proteins - Structure, Function and Bioinformatics, 2006, 65 (1), pp.32-9. ⟨10.1002/prot.21087⟩
Journal articles istex inserm-00133760v1
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How flexible protein structures are? New questions on the protein structure plasticity.

Aurélie Bornot , Bernard Offmann , Alexandre de Brevern
BioForum Europe, 2007, 11, pp.24
Journal articles inserm-00189079v1
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Sucrose phosphorylase from Alteromonas mediterranea : structural insight into the regioselective α-glucosylation of (+)-catechin

Marine Goux , Marie Demonceaux , Johann Hendrickx , Claude Solleux , Emilie Lormeau , et al.
2023
Preprints, Working Papers, ... hal-04095395v1

PB-PENTAdb : a web resource for the analysis and prediction of local backbone structure and flexibility using pentapeptide protein blocks

Bernard Offmann , M. Tyagi , A. Joseph , M. Drula , M. Grondin , et al.
9th European Congress on Computation Biology (ECCB10), Sep 2010, Ghent, Belgium
Conference papers hal-01198468v1

Evolutionary dynamics of protein-protein interactions. A case study using the DJ-1/PfpI family of enzyme

L. S. Swapna , Bernard Offmann , Narayanaswamy Srinivasan
Hu, Xiaohua and Pan, Yi. Knowledge Discovery in Bioinformatics: Techniques, Methods, and Applications, John Wiley & Sons, pp.210--237, 2007, 9780470124635
Book sections hal-01198477v1
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A short survey on protein blocks.

Agnel Joseph , Garima Agarwal , Swapnil Mahajan , Jean-Christophe Gelly , Lakshmipuram S. Swapna , et al.
Biophysical Reviews, 2010, 2 (3), pp.137-147. ⟨10.1007/s12551-010-0036-1⟩
Journal articles inserm-00512823v1

Multitarget selection of catalytic antibodies with β-lactamase activity using phage display

Melody Shahsavarian , Nancy Chaaya , Narciso Costa , Didier Boquet , Alexandre Atkinson , et al.
FEBS Journal, 2017, 284 (4), pp.634-653. ⟨10.1111/febs.14012⟩
Journal articles hal-01988396v1
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A web-based tool for rational screening of mutants libraries using ProSAR

Magali Berland , Bernard Offmann , Isabelle André , Magali Remaud Simeon , Philippe Charton
Protein Engineering, Design and Selection, 2014, 27 (10), pp.375 - 381. ⟨10.1093/protein/gzu035⟩
Journal articles hal-01471908v1
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Local Protein Structures

Bernard Offmann , Manoj Tyagi , Alexandre de Brevern
Current Bioinformatics, 2007, 2, pp.165-202
Journal articles inserm-00175058v1
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A glance into the evolution of template-free protein structure prediction methodologies

Surbhi Dhingra , Ramanathan Sowdhamini , Frédéric Cadet , Bernard Offmann
Biochimie, 2020, 175, pp.85-92. ⟨10.1016/j.biochi.2020.04.026⟩
Journal articles hal-03142832v1

Construction of a 3D model of CP12, a protein linker

Fabrice Gardebien , Rajesh R Thangudu , B. Gontero , Bernard Offmann
Journal of Molecular Graphics and Modelling, 2006, 25, pp.186-195
Journal articles hal-00347315v1