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The 3D folding of metazoan genomes correlates with the association of similar repetitive elements

Axel Cournac , Romain Koszul , Julien Mozziconacci
Nucleic Acids Research, 2016, 44 (1), pp.245-255. ⟨10.1093/nar/gkv1292⟩
Journal articles hal-01294687v1

FACT mediates cohesin function on chromatin

Jonay Garcia-Luis , Luciana Lazar-Stefanita , Pilar Gutiérrez-Escribano , Agnès Thierry , Axel Cournac et al.
Nature Structural and Molecular Biology, 2019, 26 (10), pp.970-979. ⟨10.1038/s41594-019-0307-x⟩
Journal articles pasteur-02866764v1
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Filling annotation gaps in yeast genomes using genome-wide contact maps.

Hervé Marie-Nelly , Martial Marbouty , Axel Cournac , Gianni Liti , Gilles Fischer et al.
Bioinformatics, 2014, 30 (15), pp.2105-13. ⟨10.1093/bioinformatics/btu162⟩
Journal articles pasteur-01488132v1
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Crosstalk between Hepatitis B Virus and the 3D Genome Structure

João Diogo Dias , Nazim Sarica , Axel Cournac , Romain Koszul , Christine Neuveut et al.
Viruses, 2022, 14 (2), pp.445. ⟨10.3390/v14020445⟩
Journal articles pasteur-03689314v1
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Tridimensional infiltration of DNA viruses into the host genome shows preferential contact with active chromatin

Pierrick Moreau , Axel Cournac , Gianna Aurora Palumbo , Martial Marbouty , Shogofa Mortaza et al.
Nature Communications, 2018, 9 (1), pp.4268. ⟨10.1038/s41467-018-06739-4⟩
Journal articles pasteur-02866759v1

Normalization of Chromosome Contact Maps: Matrix Balancing and Visualization

Cyril Matthey-Doret , Lyam Baudry , Shogofa Mortaza , Pierrick Moreau , Romain Koszul et al.
Silvio Bicciato, Francesco Ferrari. Hi-C Data Analysis : methods and protocols, 2301, Springer US, pp.1-15, 2022, Methods in Molecular Biology, 978-1-0716-1390-0 (ebook). ⟨10.1007/978-1-0716-1390-0_1⟩
Book sections pasteur-03376844v1
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Spatial reorganization of telomeres in long-lived quiescent cells

Micol Guidi , Myriam Ruault , Martial Marbouty , Isabelle Loïodice , Axel Cournac et al.
Genome Biology, 2015, 16 (1), pp.206. ⟨10.1186/s13059-015-0766-2⟩
Journal articles hal-01206018v1

Regulation of Cohesin-Mediated Chromosome Folding by Eco1 and Other Partners

Lise Dauban , Rémi Montagne , Agnès Thierry , Luciana Lazar-Stefanita , Nathalie Bastié et al.
Molecular Cell, 2020, 77 (6), pp.1279-1293.e4. ⟨10.1016/j.molcel.2020.01.019⟩
Journal articles pasteur-02612490v1
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Condensin- and Replication-Mediated Bacterial Chromosome Folding and Origin Condensation Revealed by Hi-C and Super-resolution Imaging.

Martial Marbouty , Antoine Le gall , Diego I Cattoni , Axel Cournac , Alan Koh et al.
Molecular Cell, 2015, 59 (4), pp.588-602. ⟨10.1016/j.molcel.2015.07.020⟩
Journal articles pasteur-01419993v1
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Normalization of a chromosomal contact map

Axel Cournac , Hervé Marie-Nelly , Martial Marbouty , Romain Koszul , Julien Mozziconacci et al.
BMC Genomics, 2012, 13 (1), pp.436. ⟨10.1186/1471-2164-13-436⟩
Journal articles pasteur-00769663v1
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Evidence for a dual role of actin in regulating chromosome organization and dynamics in yeast.

Maya Spichal , Alice Brion , Sébastien Herbert , Axel Cournac , Martial Marbouty et al.
Journal of Cell Science, 2016, 129 (4), pp.681-92. ⟨10.1242/jcs.175745⟩
Journal articles pasteur-01419905v1
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Generation and Analysis of Chromosomal Contact Maps of Yeast Species.

Axel Cournac , Martial Marbouty , Julien Mozziconacci , Romain Koszul
Methods in Molecular Biology, 2016, Yeast Functional Genomics, 1361, pp.227-45. ⟨10.1007/978-1-4939-3079-1_13⟩
Journal articles pasteur-01419912v1
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High-quality genome (re)assembly using chromosomal contact data

Hervé Marie-Nelly , Martial Marbouty , Axel Cournac , Jean-François Flot , Gianni Liti et al.
Nature Communications, 2014, 5, pp.5695. ⟨10.1038/ncomms6695⟩
Journal articles hal-01138788v1
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Aspects temporel et spatial dans des systèmes de régulation génétique

Axel Cournac
Biophysique [physics.bio-ph]. Université Paris-Diderot - Paris VII, 2009. Français. ⟨NNT : ⟩
Theses tel-00472602v1

DNA looping in prokaryotes : experimental and theoretical approaches

A. Cournac , J. Plumbridge
Journal of Bacteriology, 2013, 195, pp.1109-1119
Journal articles hal-00825143v1
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3D genome reconstruction from chromosomal contacts

Annick Lesne , Julien Riposo , Paul Roger , Axel Cournac , Julien Mozziconacci et al.
Nature Methods, 2014, 11, pp.1141-1143. ⟨10.1038/NMETH.3104⟩
Journal articles hal-02324120v1

Multiscale Structuring of the E. coli Chromosome by Nucleoid-Associated and Condensin Proteins

Virginia S. Lioy , Axel Cournac , Martial Marbouty , Stéphane Duigou , Julien Mozziconacci et al.
Cell, 2018, 172 (4), pp.771--783.e18. ⟨10.1016/j.cell.2017.12.027⟩
Journal articles hal-02180787v1
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Scaffolding bacterial genomes and probing host-virus interactions in gut microbiome by proximity ligation (chromosome capture) assay

Martial Marbouty , Lyam Baudry , Axel Cournac , Romain Koszul
Science Advances , 2017, 3 (2), pp.e1602105. ⟨10.1126/sciadv.1602105⟩
Journal articles pasteur-02866658v1
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A major role for Eco1 in regulating cohesin-mediated mitotic chromosome folding

Lise Dauban , Rémi Montagne , Agnès Thierry , Luciana Lazar-Stefanita , Olivier Gadal et al.
2019
Preprints, Working Papers, ... hal-02362207v1
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Regulation of Cohesin-Mediated Chromosome Folding by Eco1 and Other Partners

Lise Dauban , Rémi Montagne , Agnès Thierry , Luciana Lazar-Stefanita , Nathalie Bastié et al.
Molecular Cell, 2020, 77 (6), pp.1279-1293.e4. ⟨10.1016/j.molcel.2020.01.019⟩
Journal articles hal-03064572v1
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High-salt Recovered Sequences are associated with the active chromosomal compartment and with large ribonucleoprotein complexes including nuclear bodies

Marie Baudement , Axel Cournac , Franck Court , Marie Seveno , Hugues Parrinello et al.
Genome Research, 2018, 28 (11), pp.1733 - 1746. ⟨10.1101/gr.237073.118⟩
Journal articles hal-01912447v1
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Metagenomic chromosome conformation capture (meta3C) unveils the diversity of chromosome organization in microorganisms

Martial Marbouty , Axel Cournac , Jean-François Flot , Hervé Marie-Nelly , Julien Mozziconacci et al.
eLife, 2014, 3, pp.e03318. ⟨10.7554/eLife.03318⟩
Journal articles hal-01316684v1
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Genome-wide replication landscape of Candida glabrata.

Stéphane Descorps-Declère , Cyril Saguez , Axel Cournac , Martial Marbouty , Thomas Rolland et al.
BMC Biology, 2015, 13, pp.69. ⟨10.1186/s12915-015-0177-6⟩
Journal articles pasteur-01370696v1