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Shaping the surface proteome of minimal bacteria

Laure Beven , Christine Citti , Pascal Sirand-Pugnet , Dubrana Marie-Pierre , Patricia Thebault et al.
Congress of the International Organization for Mycoplasmology ; 2010/07/11-16 ; Chianciano Terme (ITA). IOM congress 2010, 2010, Chianciano Terme, Italy
Conference papers hal-00648772v1
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Bioinformatic analysis of ESTs collected by Sanger and pyrosequencing methods for a keystone forest tree species: oak.

Saneyoshi Ueno , Grégoire Le Provost , Valérie Léger , Christophe C. Klopp , Céline Noirot et al.
BMC Genomics, 2010, 11, pp.650. ⟨10.1186/1471-2164-11-650⟩
Journal articles hal-00645933v1

New strategy for the representation and the integration of biomolecular knowledge at a cellular scale

Roland Barriot , Jérôme Poix , Alexis Groppi , Aurélien Barré , Nicolas Goffard et al.
Actes des 5ème Journées Ouvertes Biologie Informatique Mathématiques à Montréal (Canada), 2004, Canada. pp.3581-3589
Conference papers hal-00307645v1

Annotation transfer based on orthology relationships: reannotation of mycoplasma genomes from the Pneumoniae group

Aurélien Barré , Vincent Jouffe , Macha Nikolski , Antoine de Daruvar , Alain Blanchard et al.
JOBIM, Jul 2006, Bordeaux, France
Conference papers inria-00407480v1
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Life on arginine for Mycoplasma hominis: clues from its minimal genome and comparison with other human urogenital mycoplasmas.

Sabine Pereyre , Pascal Sirand-Pugnet , Laure Beven , Alain Charron , Hélène Renaudin et al.
PLoS Genetics, 2009, 5 (10), pp.e1000677. ⟨10.1371/journal.pgen.1000677⟩
Journal articles hal-00645937v1

AliasServer: a web server to handle multiple aliases used to refer to proteins

Florian Iragne , Aurélien Barré , Nicolas Goffard , Antoine de Daruvar
Bioinformatics, 2004, 20, pp.2331-2332
Journal articles hal-00306591v1

Bioinformatic analysis of Sanger and 454 ESTs in oak

Saneyoshi S. Ueno , Grégoire G. Le Provost , Valérie V. Léger , Christophe C. Klopp , Celine C. Noirot et al.
Conference on Forest Ecosystem Genomics and Adaptation, Jun 2010, Madrid, Spain. pp.73
Conference papers hal-00964385v1
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Utilisation d'une Grille de Calcul (GRISBI) pour le Traitement de Données NGS (New Generation Sequencing)

Florence Maurier , Alexis Groppi , Aurélien Barré , Delphine Naquin , Aurélien Roult et al.
Rencontres Scientifiques France Grilles 2011, Sep 2011, Lyon, France
Conference papers hal-00653023v1

MolliGen, a database dedicated to the comparative genomics of Mollicutes

Aurélien Barré , Antoine de Daruvar , Alain Blanchard
Nucleic Acids Research, 2004, 32, pp.D307-D310
Journal articles hal-00306648v1

Identification and Characterization of A Synovial Fluid Microbial DNA in Rheumatoid Arthritis Patients

Thomas Barnetche , Christophe Hubert , Aurélien Barré , Christophe Richez , Emilie Shipley et al.
Annual European Congress of Rheumatology, Jun 2014, Paris, France. ⟨10.1136/annrheumdis-2014-eular.4999⟩
Conference papers hal-01208393v1
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Composting-Like Conditions Are More Efficient for Enrichment and Diversity of Organisms Containing Cellulase-Encoding Genes than Submerged Cultures

Senta Heiss-Blanquet , Francoise M Fayolle-Guichard , Vincent M Lombard , Agnès M Hébert , Pedro M Coutinho et al.
PLoS ONE, 2016, 11 (12), pp.497 - 497. ⟨10.1371/journal.pone.0167216⟩
Journal articles hal-01455050v1

How does Oenococcus oeni adapt to its environment? A pangenomic oligonucleotide microarray for analysis O. oeni gene expression under wine shock.

Aurélie Goulielmakis , Julen Bridier , Aurélien Barré , Olivier Claisse , David Sherman et al.
Oeno2011- 9e symposium international d'oenologie de Bordeaux: Actes de colloques du 9e symposium international d'oenologie de Bordeaux, Jun 2011, Bordeaux, France. pp.358-363
Conference papers hal-00646867v1

New strategy for the representation and the integration of biomolecular knowledge at a cellular scale

Roland Barriot , Jerome Poix , Alexis Groppi , Aurélien Barré , Nicolas Goffard et al.
Nucleic Acids Research, 2004, 32 (12), pp.3581-9. ⟨10.1093/nar/gkh681⟩
Journal articles inria-00202722v1
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Draft Genome Sequences of Mycoplasma auris and Mycoplasma yeatsii, Two Species of the Ear Canal of Caprinae

Emilie Dordet-Frisoni , Eric Baranowski , Aurélien Barré , Alain Blanchard , Marc Breton et al.
Genome Announcements, 2013, 1 (3), pp.e00280-13. ⟨10.1128/genomeA.00280-13⟩
Journal articles hal-00907449v1
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Draft Genome Sequences of Mycoplasma alkalescens, Mycoplasma arginini, and Mycoplasma bovigenitalium, Three Species with Equivocal Pathogenic Status for Cattle

Lucía Manso-Silván , Florence Tardy , Eric Baranowski , Aurélien Barré , Alain Blanchard et al.
Genome Announcements, 2013, 1 (3), pp.e00348-13. ⟨10.1128/genomeA.00348-13⟩
Journal articles hal-00907454v1
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Microbiota Composition May Predict Anti-Tnf Alpha Response in Spondyloarthritis Patients: an Exploratory Study

Thomas Bazin , Katarzyna B Hooks , Thomas Barnetche , Marie-Elise Truchetet , Raphaël Enaud et al.
Scientific Reports, 2018, 8 (1), pp.5446. ⟨10.1038/s41598-018-23571-4⟩
Journal articles hal-01760163v1

Further Steps in TANGO: improved taxonomic assignment in metagenomics

Macha Nikolski , Daniel Alonso-Alemany , Aurélien Barré , Stefano Beretta , Paola Bonizzoni et al.
Bioinformatics, 2013, pp.10.1093/bioinformatics/btt256. ⟨10.1093/bioinformatics/btt256⟩
Journal articles hal-00848263v1
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Genome Sequences of Two Tunisian Field Strains of Avian Mycoplasma, M. meleagridis and M. gallinarum

Elhem Yacoub , Pascal Sirand-Pugnet , Aurélien Barré , Alain Blanchard , Christophe Hubert et al.
Genome Announcements, 2016, 4 (3), pp.e00558-16. ⟨10.1128/genomeA.00558-16⟩
Journal articles pasteur-02015202v1
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Population genomics of apricots unravels domestication history and adaptive events

Alexis Groppi , Shuo Liu , A. Cornille , David Tricon , Quynh Trang Bui et al.
Nature Communications, 2021, 12 (1), pp.3956. ⟨10.1038/s41467-021-24283-6⟩
Journal articles hal-03282504v1

MolliGen 3.0, evolution of a database dedicated to the comparative genomics of mollicutes

Aurélien Barré , Claire Lemaitre , Patricia Thebault , Antoine de Daruvar , Alain Blanchard et al.
Congress of the International Organization for Mycoplasmology ; 2010/07/11-16 ; Chianciano Terme (ITA). IOM congress 2010., 2010, Italy
Conference papers hal-00649151v1

Utilisation d'une Grille de Calcul (GRISBI) pour le Traitement de Données NGS

Florence Maurier , Alexis Groppi , Aurélien Barré , Delphine Naquin , Aurelien Roult et al.
JOBIM 2011, Jun 2011, Paris, France
Conference papers inria-00614489v1
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Complete Genome Sequence of Mycoplasma putrefaciens Strain 9231, One of the Agents of Contagious Agalactia in Goats

Virginie Dupuy , Pascal Sirand-Pugnet , Eric Baranowski , Aurélien Barré , Marc Breton et al.
Genome Announcements, 2013, 1 (3), pp.e00354-13. ⟨10.1128/genomeA.00354-13⟩
Journal articles hal-00907450v1

Aptamer selection by direct microfluidic recovery and surface plasmon resonance evaluation

Eric Dausse , Aurélien Barré , Aimé Ahissan , Alexis Groppi , Alain Rico et al.
Biosensors and Bioelectronics, 2016
Journal articles hal-01269677v1

The proteome of maritime pine wood forming tissue

Jean-Marc Gion , Céline Lalanne , Grégoire Le Provost , Hélène Ferry-Dumazet , Jorge Paiva et al.
Proteomics, 2005, 5, pp.3731-3751
Journal articles hal-00306580v1

Changing paradigm on the evolution of Mycoplasmas by exploring their pan-genome.

Christine Citti , Xavier X. Nouvel , Emilie Dordet-Frisoni , Marc Serge Marenda , Florence Tardy et al.
112th General meeting of American society for Microbiology (ASM), Jun 2012, San Franscisco, United States
Conference papers hal-02933364v1
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A novel substitution matrix fitted to the compositional bias in Mollicutes improves the prediction of homologous relationships

Claire Lemaitre , Aurélien Barré , Christine Citti , Florence Tardy , François Thiaucourt et al.
BMC Bioinformatics, 2011, 12 (1), pp.457. ⟨10.1186/1471-2105-12-457⟩
Journal articles hal-00784414v1