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Joint restoration/segmentation of multicomponent images with variationalBayes and higher-order graphical models (HOGMep)
Yuling Zheng
,
Aurélie Pirayre
,
Laurent Duval
,
Jean-Christophe Pesquet
2017
Preprints, Working Papers, ...
hal-01528856v1
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BRANE Cut: Biologically-Related A priori Network Enhancement with Graph cuts for Gene Regulatory Network Inference
Aurélie Pirayre
,
Camille Couprie
,
Frédérique Bidard
,
Laurent Duval
,
Jean-Christophe Pesquet
Journal articles
hal-01330611v1
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Reconstruction and Clustering with Graph optimization and Priors on Gene networks and Images
Aurélie Pirayre
Methods and statistics. Université Paris Est - Marne-la-Vallée, 2017. English. ⟨NNT : ⟩
Theses
tel-01879732v1
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A review on graph optimization and algorithmic frameworks
Alessandro Benfenati
,
Emilie Chouzenoux
,
Laurent Duval
,
Jean-Christophe Pesquet
,
Aurélie Pirayre
[Research Report] LIGM - Laboratoire d'Informatique Gaspard-Monge. 2018
Reports
hal-01901499v1
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HOGMep: Variational Bayes and higher-order graphical models applied to joint image recovery and segmentation
Aurélie Pirayre
,
Yuling Y. Zheng
,
Laurent Duval
,
Jean-Christophe Pesquet
Conference papers
hal-01862840v1
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Suppression de ligne de base et débruitage de chromatogrammes par pénalisation asymétrique de positivité et dérivées parcimonieuses
Laurent Duval
,
Aurélie Pirayre
,
Xiaoran Ning
,
Ivan Selesnick
GRETSI : Colloque francophone de traitement du signal et des images, Sep 2015, Lyon, France
Conference papers
hal-02077964v1
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Multiomics Data Integration for Gene Regulatory Network Inference with Exponential Family Embeddings
Surabhi Jagtap
,
Abdulkadir Çelikkanat
,
Aurélie Pirayre
,
Frederique Bidard
,
Laurent Duval
,
et al.
EUSIPCO - 29th European Signal Processing Conference, Aug 2021, Dublin / Online, Ireland
Conference papers
hal-03336884v1
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Reconstruction and clustering with graph optimization and priors on gene networks and images
Aurélie Pirayre
Theses
tel-02067269v1
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Robustifying a PLS property prediction workflow on NMR spectra with optimized processing
Laurent Duval
,
Duval Laurent
,
Lacoue-Negre Marion
,
Pirayre Aurélie
Faraday discussions: Challenges in analysis of complex natural mixtures Faraday Discussion, May 2019, Edinburgh, France
Poster communications
hal-02182628v1
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Glucose-lactose mixture feeds in industry-like conditions: a gene regulatory network analysis on the hyperproducing Trichoderma reesei strain Rut-C30
Aurélie Pirayre
,
Laurent Duval
,
Corinne Blugeon
,
Cyril Firmo
,
Sandrine Perrin
,
et al.
Journal articles
hal-02805426v1
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BRANE Clust: Cluster-Assisted Gene Regulatory Network Inference Refinement
Aurélie Pirayre
,
Camille Couprie
,
Laurent Duval
,
Jean-Christophe Pesquet
IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2018, 15 (3), pp.850-860. ⟨10.1101/114769⟩
Journal articles
hal-01330638v1
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The cellulase induction system in Trichoderma reesei strains remains well conserved despite several generations of random mutagenesis and screening
Dante Poggi-Parodi
,
Aurelie Pirayre
,
Thomas Portnoy
,
Hugues Mathis
,
Thiziri Aouam
,
et al.
Poster communications
hal-01536636v1
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Kinetic transcriptome analysis reveals an essentially intact induction system in a cellulase hyper-producer Trichoderma reesei strain
Dante Poggi-Parodi
,
Frédérique Bidard
,
Aurélie Pirayre
,
Thomas Portnoy
,
Corinne Blugeon
,
et al.
Journal articles
hal-01112360v1
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