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Joint restoration/segmentation of multicomponent images with variationalBayes and higher-order graphical models (HOGMep)

Yuling Zheng , Aurélie Pirayre , Laurent Duval , Jean-Christophe Pesquet
2017
Preprints, Working Papers, ... hal-01528856v1
Image document

BRANE Cut: Biologically-Related A priori Network Enhancement with Graph cuts for Gene Regulatory Network Inference

Aurélie Pirayre , Camille Couprie , Frédérique Bidard , Laurent Duval , Jean-Christophe Pesquet
BMC Bioinformatics, 2015, ⟨10.1186/s12859-015-0754-2⟩
Journal articles hal-01330611v1
Image document

Reconstruction and Clustering with Graph optimization and Priors on Gene networks and Images

Aurélie Pirayre
Methods and statistics. Université Paris Est - Marne-la-Vallée, 2017. English. ⟨NNT : ⟩
Theses tel-01879732v1
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A review on graph optimization and algorithmic frameworks

Alessandro Benfenati , Emilie Chouzenoux , Laurent Duval , Jean-Christophe Pesquet , Aurélie Pirayre
[Research Report] LIGM - Laboratoire d'Informatique Gaspard-Monge. 2018
Reports hal-01901499v1
Image document

HOGMep: Variational Bayes and higher-order graphical models applied to joint image recovery and segmentation

Aurélie Pirayre , Yuling Y. Zheng , Laurent Duval , Jean-Christophe Pesquet
2017 IEEE International Conference on Image Processing (ICIP), Sep 2017, Beijing, China. ⟨10.1109/ICIP.2017.8296988⟩
Conference papers hal-01862840v1
Image document

Suppression de ligne de base et débruitage de chromatogrammes par pénalisation asymétrique de positivité et dérivées parcimonieuses

Laurent Duval , Aurélie Pirayre , Xiaoran Ning , Ivan Selesnick
GRETSI : Colloque francophone de traitement du signal et des images, Sep 2015, Lyon, France
Conference papers hal-02077964v1
Image document

Multiomics Data Integration for Gene Regulatory Network Inference with Exponential Family Embeddings

Surabhi Jagtap , Abdulkadir Çelikkanat , Aurélie Pirayre , Frederique Bidard , Laurent Duval , et al.
EUSIPCO - 29th European Signal Processing Conference, Aug 2021, Dublin / Online, Ireland
Conference papers hal-03336884v1
Image document

Reconstruction and clustering with graph optimization and priors on gene networks and images

Aurélie Pirayre
Signal and Image Processing. Université Paris-Est, 2017. English. ⟨NNT : 2017PESC1170⟩
Theses tel-02067269v1
Image document

Robustifying a PLS property prediction workflow on NMR spectra with optimized processing

Laurent Duval , Duval Laurent , Lacoue-Negre Marion , Pirayre Aurélie
Faraday discussions: Challenges in analysis of complex natural mixtures Faraday Discussion, May 2019, Edinburgh, France
Poster communications hal-02182628v1

Glucose-lactose mixture feeds in industry-like conditions: a gene regulatory network analysis on the hyperproducing Trichoderma reesei strain Rut-C30

Aurélie Pirayre , Laurent Duval , Corinne Blugeon , Cyril Firmo , Sandrine Perrin , et al.
BMC Genomics, 2020, 21, pp.885. ⟨10.1186/s12864-020-07281-8⟩
Journal articles hal-02805426v1
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BRANE Clust: Cluster-Assisted Gene Regulatory Network Inference Refinement

Aurélie Pirayre , Camille Couprie , Laurent Duval , Jean-Christophe Pesquet
IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2018, 15 (3), pp.850-860. ⟨10.1101/114769⟩
Journal articles hal-01330638v1

The cellulase induction system in Trichoderma reesei strains remains well conserved despite several generations of random mutagenesis and screening

Dante Poggi-Parodi , Aurelie Pirayre , Thomas Portnoy , Hugues Mathis , Thiziri Aouam , et al.
16th European Congress on Biotechnology, Jul 2014, Edinburgh, United Kingdom. 31 (S), pp.S216, 2014, ⟨10.1016/j.nbt.2014.05.1006⟩
Poster communications hal-01536636v1
Image document

Kinetic transcriptome analysis reveals an essentially intact induction system in a cellulase hyper-producer Trichoderma reesei strain

Dante Poggi-Parodi , Frédérique Bidard , Aurélie Pirayre , Thomas Portnoy , Corinne Blugeon , et al.
Biotechnology for Biofuels, 2014, 7, pp.173. ⟨10.1186/s13068-014-0173-z⟩
Journal articles hal-01112360v1