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Pervasive transcription constitutes a new level of eukaryotic genome regulation

Julia Berretta , Antonin Morillon
EMBO Reports, 2009, 10 (9), pp.973-982. ⟨10.1038/embor.2009.181⟩
Journal articles hal-02349854v1

Reference-free transcriptome exploration reveals novel RNAs for prostate cancer diagnosis

Marina Pinskaya , Zohra Saci , Mélina Gallopin , Marc Gabriel , Ha Tn Nguyen et al.
Life Science Alliance, 2019, 2 (6), pp.e201900449. ⟨10.26508/lsa.201900449⟩
Journal articles hal-02387126v1
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From Yeast to Mammals, the Nonsense-Mediated mRNA Decay as a Master Regulator of Long Non-Coding RNAs Functional Trajectory

Sara Andjus , Antonin Morillon , Maxime Wery
Non-Coding RNA, 2021, 7 (3), pp.44. ⟨10.3390/ncrna7030044⟩
Journal articles hal-03336005v1
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Transcription-wide mapping of dihydrouridine reveals that mRNA dihydrouridylation is required for meiotic chromosome segregation

Olivier Finet , Carlo Yague-Sanz , Lara Katharina Krüger , Phong Tran , Valérie Migeot et al.
Molecular Cell, 2022, 82 (2), pp.404-419.e9. ⟨10.1016/j.molcel.2021.11.003⟩
Journal articles hal-03855061v1

H3 lysine 4 di- and tri-methylation deposited by cryptic transcription attenuates promoter activation

Marina Pinskaya , Stéphanie Gourvennec , Antonin Morillon
EMBO Journal, 2009, 28 (12), pp.1697-1707. ⟨10.1038/emboj.2009.108⟩
Journal articles hal-02349855v1

The Reality of Pervasive Transcription

Michael Clark , Paulo Amaral , Felix Schlesinger , Marcel Dinger , Ryan J Taft et al.
PLoS Biology, 2011, 9 (7), pp.e1000625. ⟨10.1371/journal.pbio.1000625⟩
Journal articles hal-02349846v1

Transcriptomic landscapes of SARS-CoV-2-infected and bystander lung cells reveal a selective upregulation of NF-κB-dependent coding and non-coding proviral transcripts

Ugo Szachnowski , Anvita Bhargava , Maxime Chazal , Dominika Foretek , Sophie-Marie Aicher et al.
2022
Preprints, Working Papers, ... hal-03853913v1
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Chromatin remodelling by INO80 at promoter proximal pause sites promotes premature termination of mRNA synthesis

Sara Luzzi , Ugo Szachnowski , Sarah Greener , Kenny Schumacher , Stuart Fulton et al.
2021
Preprints, Working Papers, ... hal-03430529v1

Diversification of human plasmacytoid predendritic cells in response to a single stimulus

Solana Alculumbre , Violaine Saint-André , Jérémy Di Domizio , Pablo Vargas , Philemon Sirven et al.
Nature Immunology, 2018, 19 (1), pp.63-75. ⟨10.1038/s41590-017-0012-z⟩
Journal articles hal-02349815v1
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Subtelomeric Transcription and its Regulation

Marta Kwapisz , Antonin Morillon
Journal of Molecular Biology, 2020, 432 (15), pp.4199-4219. ⟨10.1016/j.jmb.2020.01.026⟩
Journal articles hal-03065215v1

History, Discovery, and Classification of lncRNAs

Julien Jarroux , Antonin Morillon , Marina Pinskaya
Adv Exp Med Biol, pp.1-46, 2017, ⟨10.1007/978-981-10-5203-3_1⟩
Book sections hal-02349823v1

Nucleosome Remodeling and Transcriptional Repression Are Distinct Functions of Isw1 in Saccharomyces cerevisiae

M. Pinskaya , A. Nair , D. Clynes , Antonin Morillon , J. Mellor et al.
Molecular and Cellular Biology, 2009, 29 (9), pp.2419-2430. ⟨10.1128/MCB.01050-08⟩
Journal articles hal-02349856v1
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Native elongating transcript sequencing reveals global anti-correlation between sense and antisense nascent transcription in fission yeast

Maxime Wery , Camille Gautier , Marc Descrimes , Mayuko Yoda , Hervé Vennin-Rendos et al.
RNA, 2018, 24 (2), pp.196-208. ⟨10.1261/rna.063446.117⟩
Journal articles hal-02349817v1
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Long Noncoding RNAs as New Architects in Cancer Epigenetics, Prognostic Biomarkers, and Potential Therapeutic Targets

Didier Meseure , Kinan Drak Alsibai , Andre Nicolas , Ivan Bieche , Antonin Morillon et al.
BioMed Research International , 2015, pp.320214. ⟨10.1155/2015/320214⟩
Journal articles hal-01257869v1

Correction: A Viable Hypomorphic Allele of the Essential IMP3 Gene Reveals Novel Protein Functions in Saccharomyces cerevisiae.

Bruno Cosnier , Marta Kwapisz , Isabelle Hatin , Olivier Namy , Sylvie Hermann-Le Denmat et al.
Journal articles hal-00600190v1

Transcription-wide mapping of dihydrouridine reveals that mRNA dihydrouridylation is required for meiotic chromosome segregation

Olivier Finet , Carlo Yague-Sanz , Lara Katharina Krüger , Phong Tran , Valérie Migeot et al.
Molecular Cell, 2022, 82 (2), pp.404-419.e9. ⟨10.1016/j.molcel.2021.11.003⟩
Journal articles hal-03848905v1
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GC content shapes mRNA storage and decay in human cells

Maïté Courel , Yves Clément , Clémentine Bossevain , Dominika Foretek , Olivia Vidal Cruchez et al.
Journal articles hal-02431783v1
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Transcription-dependent spreading of the Dal80 yeast GATA factor across the body of highly expressed genes

Aria Ronsmans , Maxime Wery , Ugo Szachnowski , Camille Gautier , Marc Descrimes et al.
PLoS Genetics, 2019, 15 (2), pp.e1007999. ⟨10.1371/journal.pgen.1007999⟩
Journal articles hal-02068888v1
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PHD and TFIIS-Like Domains of the Bye1 Transcription Factor Determine Its Multivalent Genomic Distribution

Marina Pinskaya , Yad Ghavi-Helm , Sylvie Mariotte-Labarre , Antonin Morillon , Julie Soutourina et al.
PLoS ONE, 2014, 9 (7), pp.e102464. ⟨10.1371/journal.pone.0102464⟩
Journal articles hal-01368423v1

A Role for the Mre11-Rad50-Xrs2 Complex in Gene Expression and Chromosome Organization

Romain Forey , Antoine Barthe , Mireille Tittel-Elmer , Maxime Wery , Marie-Bénédicte Barrault et al.
Journal articles hal-03048169v1

Endogenous RNAi pathway evolutionarily shapes the destiny of the antisense lncRNAs transcriptome

Ugo Szachnowski , Sara Andus , Dominika Foretek , Antonin Morillon , Maxime Wery et al.
Life Science Alliance, 2019, 2 (5), pp.e201900407. ⟨10.26508/lsa.201900407⟩
Journal articles hal-02349797v1

A Viable Hypomorphic Allele of the Essential IMP3 Gene Reveals Novel Protein Functions in Saccharomyces cerevisiae

Bruno Cosnier , Marta Kwapisz , Isabelle Hatin , Olivier Namy , Sylvie Hermann-Le Denmat et al.
PLoS ONE, 2011, 6 (4), pp.e19500. ⟨10.1371/journal.pone.0019500⟩
Journal articles hal-02349850v1

Is histone loss a common feature of DNA metabolism regulation?

Antonin Morillon
Biochemistry and Cell Biology, 2006, 84 (4), pp.450-62. ⟨10.1139/o06-070⟩
Journal articles hal-00132790v1
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HOTAIR lncRNA promotes epithelial–mesenchymal transition by redistributing LSD1 at regulatory chromatin regions

Julien Jarroux , Dominika Foretek , Claire Bertrand , Marc Gabriel , Ugo Szachnowski et al.
EMBO Reports, In press, ⟨10.15252/embr.202050193⟩
Journal articles hal-03222542v1
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Stage-dependent piRNAs in chicken implicated roles in modulating male germ cell development (vol 19, 425, 2018)

Kai-Wei Chang , Yen-Tzu Tseng , Yi Chen Chen , Chih-Yun Yu , Hung-Fu Liao et al.
BMC Genomics, 2018, 19, 1p. ⟨10.1186/s12864-018-4863-y⟩
Journal articles hal-02620755v1
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Nonsense-Mediated Decay Restricts LncRNA Levels in Yeast Unless Blocked by Double-Stranded RNA Structure

Maxime Wery , Marc Descrimes , Nicolas Vogt , Anne-Sophie Dallongeville , Daniel Gautheret et al.
Molecular & Cellular Oncology, 2016, 61 (3), pp.379-392. ⟨10.1016/j.molcel.2015.12.020⟩
Journal articles hal-01311517v1

Noncoding RNAs in gene regulation

Maxime Wery , Marta Kwapisz , Antonin Morillon
Wiley Interdisciplinary Reviews: Systems Biology and Medicine, 2011, 3 (6), pp.728-738. ⟨10.1002/wsbm.148⟩
Journal articles istex hal-02349851v1

Prognostic value of a newly identified MALAT1 alternatively spliced transcript in breast cancer

Didier Meseure , Sophie Vacher , François Lallemand , Kinan Drak Alsibai , Rana Hatem et al.
British Journal of Cancer, 2016, 114 (12), pp.1395-1404. ⟨10.1038/bjc.2016.123⟩
Journal articles hal-02349825v1

Editorial for "Diversity of the non-coding transcriptomes revealed by RNA-seq technologies

A. Morillon , J. C. Andrau
Methods, 2013, 63 (1), pp.1--2. ⟨10.1016/j.ymeth.2013.08.030⟩
Journal articles hal-02191629v1
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Transient DNMT3L Expression Reinforces Chromatin Surveillance to Halt Senescence Progression in Mouse Embryonic Fibroblast

Yoyo Chih-Yun , Tony Zk Hui , Tzu-Hao Kao , Hung-Fu Liao , Chih-Yi Yang et al.
Frontiers in Cell and Developmental Biology, 2020, 8, pp.103. ⟨10.3389/fcell.2020.00103⟩
Journal articles hal-02551122v1