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BioSimulators: a central registry of simulation engines and services for recommending specific tools
Bilal Shaikh
,
Lucian Smith
,
Dan Vasilescu
,
Gnaneswara Marupilla
,
Michael Wilson
,
et al.
2022
Preprints, Working Papers, ...
hal-03613651v1
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A comparative transcriptomic, fluxomic and metabolomic analysis of the response of Saccharomyces cerevisiae to increases in NADPH oxidation
Magalie Celton
,
Isabelle Sanchez
,
Anne Goelzer
,
Vincent Fromion
,
Carole Camarasa
,
et al.
Journal articles
hal-02649995v1
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Quantitative prediction of genome-wide resource allocation in bacteria
Anne Goelzer
,
Jan Muntel
,
Victor Chubukov
,
Matthieu Jules
,
Eric Prestel
,
et al.
ISGSB 2016: International Study Group for Systems Biology, Oct 2016, Jena, Germany
Conference papers
hal-02798691v1
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Cell design in bacteria as a convex optimization problem
Anne Goelzer
,
Vincent Fromion
,
Gérard Scorletti
48. IEEE Conference on Decision and Controland 28th Chinese Control Conference, Dec 2009, Shanghai, China
Conference papers
hal-02758318v1
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BiPSim: a flexible and generic stochastic simulator for polymerization processes
Stephan Fischer
,
Marc Dinh
,
Vincent Henry
,
Philippe Robert
,
Anne Goelzer
,
et al.
Journal articles
hal-03288602v1
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Resource allocation in living organisms
Anne Goelzer
,
Vincent Fromion
Journal articles
hal-01606365v1
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BiPOm: a rule-based ontology to represent and infer molecule knowledge from a biological process-centered viewpoint
Vincent Henry
,
Fatiha Saïs
,
Olivier Inizan
,
Elodie Marchadier
,
Juliette Dibie
,
et al.
Journal articles
hal-02907978v1
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Global reconstruction of genetic and metabolic regulatory networks of Bacillus subtilis
Anne Goelzer
,
Philippe Bessières
,
Vincent Fromion
Bacell meeting, Mar 2007, Gröningen, Netherlands. pp.1
Conference papers
hal-02812660v1
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Transcriptional controls of the central carbon metabolism in Bacillus subtilis
Stephane S. Aymerich
,
Anne Goelzer
,
Vincent Fromion
Global Regulatory Networks in Bacillus Subtilis, Transworld Research Network, 2007, 978-81-7895-299-4
Book sections
hal-02822491v1
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Conversion of Glycerol to 3-Hydroxypropanoic Acid by Genetically Engineered Bacillus subtilis
Aida A Kalantari
,
Tao Chen
,
Boyang Ji
,
Ivan A. Stancik
,
Vaishnavi Ravikumar
,
et al.
Journal articles
hal-01562111v1
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Automated generation of bacterial resource allocation models
Ana Bulovic
,
Stéphan Fischer
,
Marc Dinh
,
Felipe Golib
,
Wolfram Liebermeister
,
et al.
Journal articles
hal-02623933v1
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Dynamical resource balance models for bioreactor optimization
Guillaume Jeanne
,
Anne Goelzer
,
Sihem Tebbani
,
Didier Dumur
,
Vincent Fromion
7th IFAC Conference on Foundation of Systems Biology in Engineering (FOSBE), Aug 2018, Chicago, United States
Conference papers
hal-02111232v1
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Optimization of a micro-organisms culture in a fedbatch bioreactor using an intracellular model
Guillaume Jeanne
,
Sihem Tebbani
,
Anne Goelzer
,
Vincent Fromion
,
Didier Dumur
Conference papers
hal-01608200v1
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Quantitative prediction of genome-wide resource allocation in bacteria
Anne Goelzer
,
Vincent Fromion
FOSBE, Oct 2016, Magdebourg, Germany. pp.1
Conference papers
hal-01603637v1
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Integration of protein dynamics in batch bioprocess optimization
Guillaume Jeanne
,
Sihem Tebbani
,
Didier Dumur
,
Anne Goelzer
,
Vincent Fromion
37th Benelux Meeting on Systems and Control, Mar 2018, Soesterberg, Netherlands
Conference papers
hal-02111230v1
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Quantitative prediction of genome-wide resource allocation in bacteria
Anne Goelzer
,
Jan Muntel
,
Victor Chubukov
,
Matthieu Jules
,
Eric Prestel
,
et al.
Journal articles
hal-01536511v1
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An ontology to structure biological data: the contribution of mathematical models
Olivier Inizan
,
Vincent Fromion
,
Anne Goelzer
,
Fatiha Saïs
,
Danai Symeonidou
Conference papers
hal-03950707v1
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Emergence de structures modulaires dans les régulations des systèmes biologiques : théorie et applications à Bacillus subtilis
Anne Goelzer
Theses
tel-00597796v1
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Comprehensive absolute quantification of the cytosolic proteome of Bacillus subtilis by data independent, parallel fragmentation in liquid chromatography/mass spectrometry (LC/MSE)
Jan Muntel
,
Vincent Fromion
,
Anne Goelzer
,
Sandra Maass
,
Ulrike Mäder
,
et al.
Journal articles
hal-02633127v1
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A first analysis of the central carbon pathway of Bacillus subtilis: Integration of both genetic and enzymatic levels in regulations
Anne Goelzer
,
Fadia Bekkal Brikci
,
Vincent Fromion
International Conference of System Biology (ICSB), Aug 2008, Göteborg, Sweden. 1p., 2008
Poster communications
hal-02814728v1
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Towards a systemic prediction of all cell component concentrations: the Resource Balance Analysis (RBA)
Anne Goelzer
,
Catherine Tanous-Healy
,
Gérard Scorletti
,
Vincent Fromion
conférence: Bacell, 2009, Copenhague, Denmark. pp.1
Conference papers
hal-02816415v1
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Growth rate reflects a bottleneck on the resource sharing between cellular processes
Anne Goelzer
,
Catherine Tanous-Healy
,
G. Scorletti
,
Vincent Fromion
Conference: Systems Biology of microorganisms, 2010, Paris, France. pp.1
Conference papers
hal-02815643v1
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Emergences de structures modulaires dans les régulations des systèmes biologiques: Théorie et application à Bacillus subtilis
Anne Goelzer
Mathématiques [math]. Ecole Centrale de Lyon, 2010. Français. ⟨NNT : ⟩
Theses
tel-02821899v1
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L’allocation de ressources dans les systèmes biologiques Un cadre de modélisation pour comprendre et prédire le fonctionnement des organismes vivants
Anne Goelzer
Sciences du Vivant [q-bio]. Université paris-saclay, 2022
Habilitation à diriger des recherches
tel-04072365v1
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The bacterial interlocked process ONtology (BiPON): a systemic multi-scale unified representation of biological processes in prokaryotes
Vincent J. Henry
,
Anne Goelzer
,
Arnaud Ferré
,
Stéphan Fischer
,
Marc Dinh
,
et al.
Journal articles
hal-01652923v1
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IGO, Integration from Genomes to Organisms
Sandra S. Derozier
,
Helene H. Chiapello
,
Thomas Lacroix
,
Cyprien Guerin Guérin
,
Valentin Loux
,
et al.
JOBIM 2013, Jul 2013, Toulouse, France. , pp.246, 2013, JOBIM TOULOUSE 2013 - RÉSUMÉS COURTS (affiches)
Poster communications
hal-02746442v1
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A first analysis of the central carbon pathway of Bacillus subtilis: Integration of both genetic and enzymatic levels in regulations
Anne Goelzer
,
Vincent Fromion
BACELL 2008, Mar 2008, Oslo, Norway. 1 p
Conference papers
hal-02811611v1
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BiPOm: Biological interlocked Process Ontology for metabolism. How to infer molecule knowledge from biological process?
Vincent J. Henry
,
Fatiha Saïs
,
Elodie Marchadier
,
Juliette Dibie-Barthelemy
,
Anne Goelzer
,
et al.
International Conference on Biomedical Ontology, ICBO 2017, Sep 2017, Newcastle upon Tyne, United Kingdom
Conference papers
hal-01652924v1
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Dynamical resource allocation models for bioreactor optimization
Guillaume Jeanne
,
Anne Goelzer
,
Sihem Tebbani
,
Didier Dumur
,
Vincent Fromion
Conference papers
hal-02736921v1
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Integration of genetic and enzymatic controls in metabolic pathways
Anne Goelzer
,
Fadia Bekkal Brikci
,
Vincent Fromion
ICSB 2008, Aug 2008, Gothenburg, Sweden. pp.1, 2008
Poster communications
hal-02814742v1
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