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BioSimulators: a central registry of simulation engines and services for recommending specific tools

Bilal Shaikh , Lucian Smith , Dan Vasilescu , Gnaneswara Marupilla , Michael Wilson , et al.
2022
Preprints, Working Papers, ... hal-03613651v1
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A comparative transcriptomic, fluxomic and metabolomic analysis of the response of Saccharomyces cerevisiae to increases in NADPH oxidation

Magalie Celton , Isabelle Sanchez , Anne Goelzer , Vincent Fromion , Carole Camarasa , et al.
BMC Genomics, 2012, 13 (1), pp.317. ⟨10.1186/1471-2164-13-317⟩
Journal articles hal-02649995v1
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Quantitative prediction of genome-wide resource allocation in bacteria

Anne Goelzer , Jan Muntel , Victor Chubukov , Matthieu Jules , Eric Prestel , et al.
ISGSB 2016: International Study Group for Systems Biology, Oct 2016, Jena, Germany
Conference papers hal-02798691v1
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Cell design in bacteria as a convex optimization problem

Anne Goelzer , Vincent Fromion , Gérard Scorletti
48. IEEE Conference on Decision and Controland 28th Chinese Control Conference, Dec 2009, Shanghai, China
Conference papers hal-02758318v1

BiPSim: a flexible and generic stochastic simulator for polymerization processes

Stephan Fischer , Marc Dinh , Vincent Henry , Philippe Robert , Anne Goelzer , et al.
Scientific Reports, 2021, 11 (1), ⟨10.1038/s41598-021-92833-5⟩
Journal articles hal-03288602v1

Resource allocation in living organisms

Anne Goelzer , Vincent Fromion
Biochemical Society Transactions, 2017, 45 (4), ⟨10.1042/BST20160436⟩
Journal articles hal-01606365v1

BiPOm: a rule-based ontology to represent and infer molecule knowledge from a biological process-centered viewpoint

Vincent Henry , Fatiha Saïs , Olivier Inizan , Elodie Marchadier , Juliette Dibie , et al.
BMC Bioinformatics, 2020, 21 (1), ⟨10.1186/s12859-020-03637-9⟩
Journal articles hal-02907978v1
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Global reconstruction of genetic and metabolic regulatory networks of Bacillus subtilis

Anne Goelzer , Philippe Bessières , Vincent Fromion
Bacell meeting, Mar 2007, Gröningen, Netherlands. pp.1
Conference papers hal-02812660v1

Transcriptional controls of the central carbon metabolism in Bacillus subtilis

Stephane S. Aymerich , Anne Goelzer , Vincent Fromion
Global Regulatory Networks in Bacillus Subtilis, Transworld Research Network, 2007, 978-81-7895-299-4
Book sections hal-02822491v1
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Conversion of Glycerol to 3-Hydroxypropanoic Acid by Genetically Engineered Bacillus subtilis

Aida A Kalantari , Tao Chen , Boyang Ji , Ivan A. Stancik , Vaishnavi Ravikumar , et al.
Frontiers in Microbiology, 2017, 8, pp.638. ⟨10.3389/fmicb.2017.00638⟩
Journal articles hal-01562111v1
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Automated generation of bacterial resource allocation models

Ana Bulovic , Stéphan Fischer , Marc Dinh , Felipe Golib , Wolfram Liebermeister , et al.
Metabolic Engineering, 2019, 55, pp.12-22. ⟨10.1016/j.ymben.2019.06.001⟩
Journal articles hal-02623933v1

Dynamical resource balance models for bioreactor optimization

Guillaume Jeanne , Anne Goelzer , Sihem Tebbani , Didier Dumur , Vincent Fromion
7th IFAC Conference on Foundation of Systems Biology in Engineering (FOSBE), Aug 2018, Chicago, United States
Conference papers hal-02111232v1
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Optimization of a micro-organisms culture in a fedbatch bioreactor using an intracellular model

Guillaume Jeanne , Sihem Tebbani , Anne Goelzer , Vincent Fromion , Didier Dumur
25th Mediterranean Conference on Control and Automation, MED 2017, Jun 2017, Valletta, Malta. ⟨10.1109/MED.2017.7984260⟩
Conference papers hal-01608200v1
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Quantitative prediction of genome-wide resource allocation in bacteria

Anne Goelzer , Vincent Fromion
FOSBE, Oct 2016, Magdebourg, Germany. pp.1
Conference papers hal-01603637v1
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Integration of protein dynamics in batch bioprocess optimization

Guillaume Jeanne , Sihem Tebbani , Didier Dumur , Anne Goelzer , Vincent Fromion
37th Benelux Meeting on Systems and Control, Mar 2018, Soesterberg, Netherlands
Conference papers hal-02111230v1

Quantitative prediction of genome-wide resource allocation in bacteria

Anne Goelzer , Jan Muntel , Victor Chubukov , Matthieu Jules , Eric Prestel , et al.
Metabolic Engineering, 2015, 32, pp.232-243. ⟨10.1016/j.ymben.2015.10.003⟩
Journal articles hal-01536511v1

An ontology to structure biological data: the contribution of mathematical models

Olivier Inizan , Vincent Fromion , Anne Goelzer , Fatiha Saïs , Danai Symeonidou
15th International Conference on Metadata and Semantics Research, Nov 2021, Madrid & Virtual, Spain. pp.57-64, ⟨10.1007/978-3-030-98876-0_5⟩
Conference papers hal-03950707v1
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Emergence de structures modulaires dans les régulations des systèmes biologiques : théorie et applications à Bacillus subtilis

Anne Goelzer
Sciences de l'ingénieur [physics]. Ecole Centrale de Lyon, 2010. Français. ⟨NNT : 2010ECDL0030⟩
Theses tel-00597796v1

Comprehensive absolute quantification of the cytosolic proteome of Bacillus subtilis by data independent, parallel fragmentation in liquid chromatography/mass spectrometry (LC/MSE)

Jan Muntel , Vincent Fromion , Anne Goelzer , Sandra Maass , Ulrike Mäder , et al.
Molecular and Cellular Proteomics, 2014, 13 (4), pp.1008-1019. ⟨10.1074/mcp.M113.032631⟩
Journal articles hal-02633127v1
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A first analysis of the central carbon pathway of Bacillus subtilis: Integration of both genetic and enzymatic levels in regulations

Anne Goelzer , Fadia Bekkal Brikci , Vincent Fromion
International Conference of System Biology (ICSB), Aug 2008, Göteborg, Sweden. 1p., 2008
Poster communications hal-02814728v1
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Towards a systemic prediction of all cell component concentrations: the Resource Balance Analysis (RBA)

Anne Goelzer , Catherine Tanous-Healy , Gérard Scorletti , Vincent Fromion
conférence: Bacell, 2009, Copenhague, Denmark. pp.1
Conference papers hal-02816415v1
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Growth rate reflects a bottleneck on the resource sharing between cellular processes

Anne Goelzer , Catherine Tanous-Healy , G. Scorletti , Vincent Fromion
Conference: Systems Biology of microorganisms, 2010, Paris, France. pp.1
Conference papers hal-02815643v1
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Emergences de structures modulaires dans les régulations des systèmes biologiques: Théorie et application à Bacillus subtilis

Anne Goelzer
Mathématiques [math]. Ecole Centrale de Lyon, 2010. Français. ⟨NNT : ⟩
Theses tel-02821899v1
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L’allocation de ressources dans les systèmes biologiques Un cadre de modélisation pour comprendre et prédire le fonctionnement des organismes vivants

Anne Goelzer
Sciences du Vivant [q-bio]. Université paris-saclay, 2022
Habilitation à diriger des recherches tel-04072365v1
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The bacterial interlocked process ONtology (BiPON): a systemic multi-scale unified representation of biological processes in prokaryotes

Vincent J. Henry , Anne Goelzer , Arnaud Ferré , Stéphan Fischer , Marc Dinh , et al.
Journal of Biomedical Semantics, 2017, 8 (53), 16 p. ⟨10.1186/s13326-017-0165-6⟩
Journal articles hal-01652923v1
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IGO, Integration from Genomes to Organisms

Sandra S. Derozier , Helene H. Chiapello , Thomas Lacroix , Cyprien Guerin Guérin , Valentin Loux , et al.
JOBIM 2013, Jul 2013, Toulouse, France. , pp.246, 2013, JOBIM TOULOUSE 2013 - RÉSUMÉS COURTS (affiches)
Poster communications hal-02746442v1
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A first analysis of the central carbon pathway of Bacillus subtilis: Integration of both genetic and enzymatic levels in regulations

Anne Goelzer , Vincent Fromion
BACELL 2008, Mar 2008, Oslo, Norway. 1 p
Conference papers hal-02811611v1
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BiPOm: Biological interlocked Process Ontology for metabolism. How to infer molecule knowledge from biological process?

Vincent J. Henry , Fatiha Saïs , Elodie Marchadier , Juliette Dibie-Barthelemy , Anne Goelzer , et al.
International Conference on Biomedical Ontology, ICBO 2017, Sep 2017, Newcastle upon Tyne, United Kingdom
Conference papers hal-01652924v1
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Dynamical resource allocation models for bioreactor optimization

Guillaume Jeanne , Anne Goelzer , Sihem Tebbani , Didier Dumur , Vincent Fromion
7th. International FOSBE 2018 - Foundations of Systems Biology in Engineering, Aug 2018, Chicago, United States. ⟨10.1016/j.ifacol.2018.09.020⟩
Conference papers hal-02736921v1
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Integration of genetic and enzymatic controls in metabolic pathways

Anne Goelzer , Fadia Bekkal Brikci , Vincent Fromion
ICSB 2008, Aug 2008, Gothenburg, Sweden. pp.1, 2008
Poster communications hal-02814742v1