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A detection based framework for systematic analysis of dual color TIRF microscopy

Anatole Chessel , Bertrand Cinquin , François Waharte , Charles Kervrann , Jean Salamero et al.
Focus on Microscopy (FOM'10), Mar 2010, Shangai, China
Conference papers inria-00541107v1
Image document

Computer vision and otolith : toward a modelisation of the morphogenesis of accretionary processes

Anatole Chessel , Ronan Fablet , Frédéric Cao
ESAIM: Proceedings, 2008, 22, pp.150 - 154. ⟨10.1051/proc:072218⟩
Journal articles hal-01764968v1

A detection-based framework for the analysis of recycling in TIRF microscopy

Anatole Chessel , Bertrand Cinquin , Sabine Bardin , Jérôme Boulanger , Jean Salamero et al.
IEEE International Symposium on Biomedical Imaging: From Nano to Macro (ISBI 2010), IEEE Signal Processing Society, Apr 2010, Rotterdam, Netherlands. pp.1281-1284, ⟨10.1109/ISBI.2010.5490230⟩
Conference papers inria-00541102v1
Image document

Neural Cell Segmentation in Large-Scale 3D Color Fluorescence Microscopy Images for Developemental Neuroscience

F. Nourbakhsh , L. Abdeladim , S. Clavreul , K. Loulier , E. Beaurepaire et al.
25th IEEE International Conference on Image Processing (ICIP 2018), Oct 2018, Athènes, Greece. ⟨10.1109/ICIP.2018.8451702⟩
Conference papers hal-01910114v1
Image document

Variational level-set reconstruction of accretionary morphogenesis from images.

Ronan Fablet , Sylvain Pujolle , Anatole Chessel , Abdesslam Benzinou , Frédéric Cao et al.
ICIP 2006 : 13th IEEE International conference on Image Processing, Oct 2006, Atlanta, United States. pp.221 - 224, ⟨10.1109/ICIP.2006.312465⟩
Conference papers hal-02344289v1

Reconstructing individual shape histories of fish otoliths : a new image-based tool for otolith growth analysis and modeling

Ronan Fablet , Anatole Chessel , Sebastien Carbini , Abdesslam Benzinou , Hélène de Pontual et al.
Fisheries Research, 2009, 96 (2-3), pp.148 - 159. ⟨10.1016/j.fishres.2008.10.011⟩
Journal articles hal-00473720v1
Image document

GeNePy3D: a quantitative geometry python toolbox for bioimaging

Minh-Son Phan , Anatole Chessel
Journal articles pasteur-03678857v1

A maximum likelihood method for lifetime estimation in photon counting-based fluorescence lifetime imaging microscopy

Anatole Chessel , François Waharte , Jean Salamero , Charles Kervrann
EUSIPCO - European Signal Processing Conference, Sep 2013, Marrakech, Morocco. pp.1-5
Conference papers hal-00931631v1
Image document

Conditional random fields for object and background estimation in fluorescence video-microscopy

Thierry Pecot , Anatole Chessel , Sabine Bardin , Jean Salamero , Patrick Bouthemy et al.
IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2012, Jun 2009, Boston, MA, United States. pp.734-737
Conference papers hal-00794876v1

An Overview of data science uses in bioimage informatics

Anatole Chessel
Methods, 2017, 115, pp.110 - 118. ⟨10.1016/j.ymeth.2016.12.014⟩
Journal articles hal-01760528v1

Chromatic serial multiphoton microscopy for multicolor imaging of large brain volumes

Lamiae Abdeladim , Katherine S. Matho , Solène Clavreul , Pierre Mahou , Jean-Marc Sintes et al.
Advances in Microscopic Imaging, Jun 2019, Munich, Germany. pp.7, ⟨10.1117/12.2526947⟩
Conference papers hal-02372159v1
Image document

Simultaneous NAD(P)H and FAD fluorescence lifetime microscopy of long UVA–induced metabolic stress in reconstructed human skin

Thi Phuong Lien Ung , Seongbin Lim , Xavier Solinas , Pierre Mahou , Anatole Chessel et al.
Scientific Reports, 2021, 11, pp.22171. ⟨10.1038/s41598-021-00126-8⟩
Journal articles hal-03427279v1
Image document

Mechanical cell competition kills cells via induction of lethal p53 levels

Laura Wagstaff , Maja Goschorska , Kasia Kozyrska , Guillaume Duclos , Iwo Kucinski et al.
Nature Communications, 2016, 7, pp.11373. ⟨10.1038/ncomms11373⟩
Journal articles hal-01327310v1
Image document

Advanced microcopy to study tracking and spatiotemporal organization of intracellular membranes

Bertrand Cinquin , Alexandre Gidon , Anatole Chessel , Thierry Pecot , Jérôme Boulanger et al.
Bio-Medical Materials and Engineering, 2011
Journal articles inria-00541284v1

Automated Quantification With Sub-Micrometer Scale Precision In Volumetric Multicolor Multiphoton Microscopy Images

Minh Son Phan , Katherine S. Matho , Lamiae Abdeladim , Jean Livet , Emmanuel Beaurepaire et al.
2019 IEEE 16th International Symposium on Biomedical Imaging (ISBI), Apr 2019, Venice, France. pp.521-525, ⟨10.1109/ISBI.2019.8759200⟩
Conference papers hal-02372253v1

EDAM-bioimaging : The ontology of bioimage informatics operations, topics, data, and formats (update 2020)

Matúš Kalaš , Laure Plantard , Nataša Sladoje , Joakim Lindblad , Moritz Alexander Kirschmann et al.
ELIXIR All Hands 2020, Jun 2020, Virtual, United Kingdom
Poster communications hal-02910948v1

EDAM-bioimaging : The ontology of bioimage informatics operations, topics, data, and formats (update 2019)

Matúš Kalaš , Laure Plantard , Nataša Sladoje , Joakim Lindblad , Moritz Alexander Kirschmann et al.
3rd NEUBIAS Bioimage Analysis Community Conference 2019, Jun 2020, Luxembourg, Luxembourg
Poster communications hal-02910949v1

Background Fluorescence Estimation and Vesicle Segmentation in Live Cell Imaging with Conditional Random Fields

Thierry Pécot , Patrick Bouthemy , Jérôme Boulanger , Anatole Chessel , Sabine Bardin et al.
IEEE Transactions on Image Processing, 2015, 24 (2), pp.14. ⟨10.1109/TIP.2014.2380178⟩
Journal articles hal-01103126v1

Détection a contrario multi-modale de structures curvilinéaire

Anatole Chessel , Ronan Fablet , Charles Kervrann , Frédéric Cao
RFIA'2008 : 15ème congrès francophone AFRIF-AFIA de reconnaissance des formes et intelligence artificielle, Jan 2008, Amiens, France. pp.1 - 8
Conference papers hal-02344352v1

Image Data Resource: a bioimage data integration and publication platform

Eleanor Williams , Josh Moore , Simon Li , Gabriella Rustici , Aleksandra Tarkowska et al.
Nature Methods, 2017, 14 (8), pp.775 - 781. ⟨10.1038/nmeth.4326⟩
Journal articles hal-01760728v1

Change detection methods in fluorescence live cell imaging for sub-cellular trafficking analysis

Charles Kervrann , Jérôme Boulanger , Anatole Chessel , Bertrand Cinquin , Jean Salamero et al.
BioImage Informatics II, Janelia Farm - Howard Hugues Medical Institute, Sep 2011, Ashburn VA, United States
Conference papers hal-00651919v1
Image document

The lncRNA 44s2 Study Applicability to the Design of 45-55 Exon Skipping Therapeutic Strategy for DMD

Elena Gargaun , Sestina Falcone , Guilhem Sole , Julien Durigneux , Andoni Urtizberea et al.
Biomedicines, 2021, 9 (2), pp.219. ⟨10.3390/biomedicines9020219⟩
Journal articles hal-03163543v1

Otolith image by computer vision : extractopn growth rings and recovering shape evolution of accretionary structures

Anatole Chessel , Ronan Fablet , Charles Kervrann , Frédéric Cao
Biosignals 2008 : International Conference on Bio-Inspired Signal Processing Systems31, Jan 2008, Funchal, Portugal
Conference papers hal-02344360v1

GANs for Biological Image Synthesis

Anton Osokin , Anatole Chessel , Rafael E. Carazo Salas , Federico Vaggi
ICCV 2017 - IEEE International Conference on Computer Vision, Oct 2017, Venice, Italy
Conference papers hal-01611692v1
Image document

nAdder: A scale-space approach for the 3D analysis of neuronal traces

Minh Son Phan , Katherine Matho , Emmanuel Beaurepaire , Jean Livet , Anatole Chessel et al.
2020
Preprints, Working Papers, ... hal-03083517v1
Image document

Computational geometry-based scale-space and modal image decomposition: Application to light video-microscopy imaging

Anatole Chessel , Bertrand Cinquin , Sabine Bardin , Jean Salamero , Charles Kervrann et al.
Internationale Conference on Scale Space and Variational Methods, Jun 2009, Voss, Norway. pp.770-781
Conference papers hal-00794884v1
Image document

Evaluation of image sequences additive decomposition algorithms for membrane analysis in fluorescence video-microscopy

Anatole Chessel , Thierry Pecot , Sabine Bardin , Charles Kervrann , Jean Salamero et al.
ISBI 2009 - IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Jun 2009, Boston, United States. pp.1099-1102, ⟨10.1109/ISBI.2009.5193248⟩
Conference papers hal-00794867v1
Image document

Interpolating orientation fields : an axiomatic approach

Anatole Chessel , Ronan Fablet , Frédéric Cao
ECCV'06 : 9th European Conference on Computer Vision, May 2006, Graz, Austria. pp.241 - 254, ⟨10.1007/11744085_19⟩
Conference papers hal-02344280v1

A Genomic Multiprocess Survey of Machineries that Control and Link Cell Shape, Microtubule Organization, and Cell-Cycle Progression

Veronika Graml , Xenia Studera , Jonathan L.D. Lawson , Anatole Chessel , Marco Geymonat et al.
Developmental Cell, 2014, 31 (2), pp.227-239. ⟨10.1016/j.devcel.2014.09.005⟩
Journal articles hal-01101880v1
Image document

EDAM-bioimaging : The ontology of bioimage informatics operations, topics, data, and formats

Matúš Kalaš , Laure Plantard , Nataša Sladoje , Joakim Lindblad , Moritz Alexander Kirschmann et al.
NEUBIAS, Feb 2019, Luxembourg, Luxembourg. ⟨10.7490/f1000research.1115257.1⟩
Poster communications hal-02267597v1