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The gastrin and cholecystokinin receptors mediated signaling network: a scaffold for data analysis and new hypotheses on regulatory mechanisms.
Sushil Tripathi
,
Åsmund Flobak
,
Konika Chawla
,
Anaïs Baudot
,
Torunn Bruland
et al.
BMC Systems Biology, 2014, 9, pp.40
Journal articles
hal-01221589v1
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A molecular hypothesis to explain direct and inverse co-morbidities between Alzheimer’s Disease, Glioblastoma and Lung cancer
Jon Sánchez-Valle
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Hector Tejero
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Kristina Ibáñez
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José Luis Portero
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Martin Krallinger
et al.
Journal articles
hal-01610984v1
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Network analysis and protein function prediction with the PRODISTIN Web site
Anaïs Baudot
,
Ouissem Souiai
,
C. Brun
Methods in Molecular Biology, 2012, 804, pp.313-26
Journal articles
hal-01596219v1
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Molecular Evidence for the Inverse Comorbidity between Central Nervous System Disorders and Cancers Detected by Transcriptomic Meta-analyses
Kristina Ibáñez
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César Boullosa
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Rafael Tabarés-Seisdedos
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Anaïs Baudot
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Alfonso Valencia
et al.
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hal-01266780v1
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Integrative proteomic and phosphoproteomic profiling of prostate cell lines
Maria Katsogiannou
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Jean-Baptiste Boyer
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Alberto Valdeolivas
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Laurence Calzone
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hal-03614575v1
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AKT Signaling Modifies the Balance between Cell Proliferation and Migration in Neural Crest Cells from Patients Affected with Bosma Arhinia and Microphthalmia Syndrome
Camille Laberthonnière
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Elva-María Novoa-Del-Toro
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Raphaël Chevalier
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Natacha Broucqsault
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Vanitha Venkoba Rao
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hal-03280671v1
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Random walk with restart on multiplex and heterogeneous biological networks
Alberto Valdeolivas
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Laurent Tichit
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Claire L. Navarro
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Sophie Perrin
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Gaelle Odelin
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hal-01946427v1
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No paradox, no progress: inverse cancer comorbidity in people with other complex diseases
Rafael Tabarés-Seisdedos
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Nancy Dumont
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Anaïs Baudot
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Jose M Valderas
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Joan Climent
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Journal articles
hal-01266785v1
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MultiVERSE: a multiplex and multiplex-heterogeneous network embedding approach
Léo Pio-Lopez
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Alberto Valdeolivas
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Laurent Tichit
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Élisabeth Remy
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Anaïs Baudot
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hal-03359094v2
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The functional landscape of Hsp27 reveals new cellular processes such as DNA repair and alternative splicing and proposes novel anticancer targets.
Maria Katsogiannou
,
Claudia Andrieu
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Virginie Baylot
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Anaïs Baudot
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Nelson J Dusetti
et al.
Journal articles
hal-01104661v1
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Editorial: Direct and Inverse Comorbidities Between Complex Disorders
Rafael Tabarés-Seisdedos
,
Anaïs Baudot
Journal articles
hal-01352722v1
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miR-376a-3p and miR-376b-3p overexpression in Hutchinson-Gilford progeria fibroblasts inhibits cell proliferation and induces premature senescence
Diane Frankel
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Valerie Delecourt
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Elva-María Novoa-Del-Toro
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Jérôme Robin-Ducellier
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Coraline Airault
et al.
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hal-03788582v1
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Assessment of network module identification across complex diseases
Sarvenaz Choobdar
,
Mehmet Ahsen
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Jake Crawford
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Mattia Tomasoni
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Tao Fang
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Journal articles
hal-02333148v1
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Prediction of Disease-associated Genes by advanced Random Walk with Restart on Multiplex and Heterogeneous Biological Networks
Alberto Valdeolivas
,
Elisabeth Remy
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Laurent Tichit
,
Gaëlle Odelin
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Claire Navarro
et al.
JOBIM 2017, Jul 2017, Lille, France
Conference papers
hal-03582849v1
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SMCHD1 variants may induce variegated expression in Facio Scapulo Humeral Dystophy and Bosma Arhinia and microphtalmia syndrome
Camille Laberthonnière
,
Raphaël Chevalier
,
Camille Dion
,
Mégane Delourme
,
David Hirst
et al.
2022
Preprints, Working Papers, ...
hal-03634209v1
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Interpreting molecular similarity between patients as a determinant of disease comorbidity relationships
Jon Sánchez-Valle
,
Hector Tejero
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José María Fernández
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David Juan
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Beatriz Urda-García
et al.
Journal articles
inserm-02878879v1
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Clust&See: A Cytoscape plugin for the identification, visualization and manipulation of network clusters
Lionel Spinelli
,
Philippe Gambette
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Charles E. Chapple
,
Benoît Robisson
,
Anaïs Baudot
et al.
Journal articles
hal-00832028v2
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A Multi-Objective Genetic Algorithm to Find Active Modules in Multiplex Biological Networks
Elva-María Novoa-Del-Toro
,
Efrén Mezura-Montes
,
Matthieu Vignes
,
Frédérique Magdinier
,
Laurent Tichit
et al.
2020
Preprints, Working Papers, ...
hal-02997031v1
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Universal multilayer network exploration by random walk with restart
Anthony Baptista
,
Aitor Gonzalez
,
Anaïs Baudot
Journal articles
hal-03800682v1
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A multi-objective genetic algorithm to find active modules in multiplex biological networks
Elva-María Novoa-Del-Toro
,
Efrén Mezura-Montes
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Matthieu Vignes
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Morgane Térézol
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Frédérique Magdinier
et al.
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hal-03372492v1
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Facioscapulohumeral dystrophy weakened sarcomeric contractility is mimicked in induced pluripotent stem cells‐derived innervated muscle fibres
Camille Laberthonnière
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Elva-María Novoa-Del-Toro
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Mégane Delourme
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Raphaël Chevalier
,
Natacha Broucqsault
et al.
Journal articles
hal-03586975v1
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Tracking patient clusters over time enables to extract all the information available in the medico-administrative databases
Judith Lambert
,
Anne-Louise Leutenegger
,
Anne-Sophie Jannot
,
Anaïs Baudot
2022
Preprints, Working Papers, ...
hal-03796086v1
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Orsum: a Python package for filtering and comparing enrichment analyses using a simple principle
Ozan Ozisik
,
Morgane Térézol
,
Anaïs Baudot
Journal articles
hal-03780220v1
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Benchmarking joint multi-omics dimensionality reduction approaches for the study of cancer
Laura Cantini
,
Pooya Zakeri
,
Céline Hernandez
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Aurelien Naldi
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Denis Thieffry
et al.
Journal articles
hal-03102088v1
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Overlap of vitamin A and vitamin D target genes with CAKUT-related processes
Ozan Ozisik
,
Friederike Ehrhart
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Chris Evelo
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Alberto Mantovani
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Anaïs Baudot
et al.
Journal articles
hal-03654274v1
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Identifying communities from multiplex biological networks.
Gilles Didier
,
Christine Brun
,
Anaïs Baudot
Journal articles
hal-01255282v1
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Discovery of Drug Synergies in Gastric Cancer Cells Predicted by Logical Modeling
Åsmund Flobak
,
Anaïs Baudot
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Elisabeth Remy
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Liv Thommesen
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Denis Thieffry
et al.
Journal articles
hal-01221572v1
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Interactome mapping of PI3K-mTOR pathway identifies DEAF1 as a new interactor
Fanny Pilot-Storck
,
Emilie Chopin
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Jean-François Rual
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Anaïs Baudot
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Pavel Dobrokhotov
et al.
Journal articles
hal-02668075v1
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Molecular Inverse Comorbidity between Alzheimer’s Disease and Lung Cancer: New Insights from Matrix Factorization
Alessandro Greco
,
Jon Sanchez Valle
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Vera Pancaldi
,
Anaïs Baudot
,
Emmanuel Barillot
et al.
Journal articles
hal-02277045v2
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Benchmarking joint multi-omics dimensionality reduction approaches for cancer study
Laura Cantini
,
Pooya Zakeri
,
Céline Hernandez
,
Aurelien Naldi
,
Denis Thieffry
et al.
2020
Preprints, Working Papers, ...
hal-02998156v1
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