Modeling isogenic cancer cell response upon TRAIL treatment in multi-omics studies
Marielle Péré
,
Asma Chalabi
,
Jérémie Roux
Multiple facets of RNA in development and disease conference , Signalife Labex community, Mar 2022, Nice, France
Conference papers
hal-03868569v1
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Integrating machine learning methods to single-cell experimental workflow increases throughput and accuracy for target identification in immuno-oncology
Marielle Péré
,
Diego Oyarzun
,
Asma Chalabi
,
Madalena Chaves
,
Jérémie Roux
Sophia Summit AI , Nov 2022, Sophia Antipolis, France
Poster communications
hal-03868554v1
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TRAIL receptor-induced features of epithelial-to-mesenchymal transition increase tumour phenotypic heterogeneity: potential cell survival mechanisms
Ludovic Peyre
,
Mickael Meyer
,
Paul Hofman
,
Jérémie Roux
Journal articles
hal-03035316v1
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Profiling the Non-genetic Origins of Cancer Drug Resistance with a Single-Cell Functional Genomics Approach Using Predictive Cell Dynamics
Mickael Meyer
,
Agnès Paquet
,
Marie-Jeanne Arguel
,
Ludovic Peyre
,
Luis Gomes-Pereira
,
et al.
Journal articles
hal-03001650v1
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Core Models of Receptor Reactions to Evaluate Basic Pathway Designs Enabling Heterogeneous Commitments to Apoptosis
Marielle Péré
,
Madalena Chaves
,
Jérémie Roux
CMSB 2020 - 18th International Conference on Computational Methods in Systems Biology , Sep 2020, Konstanz, Germany. pp.298-320,
⟨10.1007/978-3-030-60327-4_16⟩
Conference papers
hal-03021538v1
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Gene prioritization based on random walks with restarts and absorbing states, to define gene sets regulating drug pharmacodynamics from single-cell analyses
Augusto Sales-De-Queiroz
,
Guilherme Sales Santa Cruz
,
Alain Jean-Marie
,
Dorian Mazauric
,
Jérémie Roux
,
et al.
2021
Preprints, Working Papers, ...
hal-03438430v1
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Two-level modeling approach to identify the regulatory dynamics capturing drug response heterogeneity in single-cells
Madalena Chaves
,
Luis Gomes-Pereira
,
Jérémie Roux
Journal articles
hal-03439255v1
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Source-Target Proximity Analysis in Protein Networks Using Random Walks with Restart; Applications to Cancer Drug Resistance Prediction from Single-Cell Data
Frédéric Cazals
,
Jérémie Roux
,
Alain Jean-Marie
,
Dorian Mazauric
,
Guilherme Sales Santa Cruz
SophI.A 2019 - Springboard for Artificial Intelligence , Université Côte d'Azur, Nov 2019, Sophia-Antipolis, France
Conference papers
hal-02432552v1
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Gene prioritization based on random walks with restarts and absorbing states, to define gene sets regulating drug pharmacodynamics from single-cell analyses
Augusto Sales de Queiroz
,
Guilherme Sales Santa Cruz
,
Alain Jean-Marie
,
Dorian Mazauric
,
Jérémie Roux
,
et al.
Journal articles
hal-03860521v1
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Modelling cell response to cancer drug treatment identifies dynamic features of efficient cell death initiation, enabling prediction and control of therapeutic response heterogeneity
Marielle Péré
,
Madalena Chaves
,
Jérémie Roux
inSiDE seminars (Signaling Dynamics and Encoding,)Connecting scientists interested in single-cell signaling dynamics , Jun 2022, Online, France
Poster communications
hal-03868579v1
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Autophagy : Moving Benchside Promises to Patient Bedsides
Amine Belaïd
,
Papa Diogop Ndiaye
,
Harilaos Filippakis
,
Jérémie Roux
,
Eric Röttinger
,
et al.
Journal articles
hal-02411388v1
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L’hétérogénéité intraclonale des tumeurs et son impact sur la médecine de précision
Jérémie Roux
,
Jean-Luc Gouzé
,
Paul Hofman
Journal articles
hal-01259249v1
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Dynamic analysis framework to detect cell division and cell death in live-cell imaging, using signal processing and machine learning
Asma Chalabi
,
Eric Debreuve
,
Jérémie Roux
ICSB 2022 - The 21st International Conference on Systems Biology , Oct 2022, Berlin (DE), Germany
Conference papers
hal-03866978v1
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Modeling cell death dynamics at the receptor level
Luis Pereira
,
Mickael Meyer
,
Paul Hofman
,
Jean-Luc Gouzé
,
Madalena Chaves
,
et al.
CompSysBio, Advanced Lecture Course on Computational Systems Biology , Mar 2017, Aussois, France
Conference papers
hal-01568506v1
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Modeling isogenic cancer cell response upon varying TRAIL stimulations to decipher the kinetic determinants of cell fate decision
Marielle Péré
,
Diego A. Oyarzun
,
Jérémie Roux
,
Madalena Chaves
Foundations of Systems Biology in Engineering (FOSBE) , Aug 2022, Cambridge, Massachusetts, United States
Conference papers
hal-03868311v1
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Modelling cell-death drug response heterogeneity at the receptor layer
Luis Pereira
,
Paul Hofman
,
Jean-Luc Gouzé
,
Madalena Chaves
,
Jérémie Roux
11th European Conference on Mathematical and Theoretical Biology (ECMTB 2018) , Jul 2018, Lisbon, Portugal
Conference papers
hal-01936435v1
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TRAIL-induced apoptosis signaling modeling identifies dynamic signs of efficient cell death initiation, enabling an early prediction of the cell response
Marielle Péré
,
Madalena Chaves
,
Jérémie Roux
CMSB 2021 - 19th International Conference on Computational Methods in Systems Biology , Sep 2021, Bordeaux, France
Conference papers
hal-03522480v1
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Coupling live-cell imaging and in situ isolation of the same single cell to profile the transient states of predicted drug-tolerant cells
Benjamin Bian
,
Agnès Paquet
,
Marie-Jeanne Arguel
,
Mickael Meyer
,
Ludovic Peyre
,
et al.
Journal articles
hal-03860511v1
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A model of apoptosis receptor reactions to study cell fate decision
Luis Gomes-Pereira
,
Madalena Chaves
,
Jérémie Roux
Conference papers
hal-03021507v2
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