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Optimizing microalgal production in raceway systems

Rafael Munoz Tamayo , Francis Mairet , Olivier Bernard
Biotechnology Progress, 2013, 29 (2), pp.543--552. ⟨10.1002/btpr.1699⟩
Journal articles hal-00850376v1

Metabolic modeling of microalgae growth and lipids production during day/night cycles and nitrogen starvation

Caroline Baroukh , Rafael Munoz Tamayo , Jean-Philippe Steyer , Olivier Bernard
Metabolic Pathway Analysis 2015, Jun 2015, Braga, Portugal
Conference papers hal-01603450v1
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The power of theoretical and practical identifiability analysis for modeling (micro-) biological processes

Rafael Munoz Tamayo
ASAS-CSAS Annual Meeting, Jun 2022, Oklahoma, United States. pp.33
Conference papers hal-03748944v1
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The shades of gray in model building and its opportunities for precision livestock farming

Rafael Munoz Tamayo
72. Annual Meeting of the European Federation of Animal Science (EAAP), Aug 2021, Davos, Switzerland
Conference papers hal-03347173v1

Predictive capabilities of a dynamic mechanistic model of in vitro fermentation by rumen microbiota

Rafael Munoz Tamayo , Alberto Stanislao Atzori , Antonello Cannas , Francesco Masoero , Sylvie Giger-Reverdin , et al.
61. Annual Meeting of the European Associationfor Animal Production (EAAP), 2019, NA, France
Conference papers hal-02193905v1

Rumen methanogens display species-specific energetic and growth dynamics: a thermodynamic and kinetic based modelling approach

Rafael Munoz Tamayo , Milka Popova , Diego Morgavi , Dominique Graviou , Jean-Pierre Morel , et al.
Journées d'Animation Scientifique du département PHASE, Institut National de Recherche Agronomique (INRA). UAR Département Physiologie Animale et Systèmes d'Elevage (0558)., Apr 2018, Rennes, France
Conference papers hal-01840971v1
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Rumen microbial genomics: from cells to genes (and back to cells)

Milka Popova , Ibrahim Fakih , Evelyne Forano , Anne Siegel , Rafael Muñoz-Tamayo , et al.
CAB Reviews Perspectives in Agriculture Veterinary Science Nutrition and Natural Resources, 2022, 2022, ⟨10.1079/cabireviews202217025⟩
Journal articles hal-03929845v1

Mathematical modelling of carbohydrate degradation by human colonic microbiota

Rafael Munoz Tamayo , Béatrice Laroche , Eric Walter , Joel Doré , Marion Leclerc
Journal of Theoretical Biology, 2010, 266 (1), pp.189-20. ⟨10.1016/j.jtbi.2010.05.040⟩
Journal articles istex hal-00521148v1

Animal modelling meets identifiability: a practioner perspective

Pierre Blavy , Laurence Puillet , Jean-Baptiste Daniel , Daniel Sauvant , Olivier Martin , et al.
Journées d'Animation Scientifique du département Phase (JAS Phase 2018), Apr 2018, Rennes, France. , 2018, Journées d’animation scientifiques du département Phase - Recueil des résumés
Poster communications hal-02738243v1
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A new approach to unravel metabolic regulations. Application to microalgae growth and lipid production under day/night cycles and nitrogen starvation

Caroline Baroukh , Olivier Bernard , Jean-Philippe Steyer , Rafael Munoz Tamayo , Benoit Chachuat
BioSynSys 2015 : 1er colloque du GDR "Biologie de Synthèse et des Systèmes", Sep 2015, Paris, France
Conference papers hal-01601441v1
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Towards the quantitative characterization of piglets' robustness to weaning: A modelling approach

Manuel Revilla , Nicolas N.C. Friggens , Laurent Broudiscou , G. Lemonnier , F. Blanc , et al.
2018
Preprints, Working Papers, ... hal-02369432v1
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DRUM: A new framework for metabolic modeling under non-balanced growth. Application to the carbon metabolism of unicellular microalgae

Caroline Baroukh , Rafael Munoz Tamayo , Jean-Philippe Steyer , Olivier Bernard
PLoS ONE, 2014, 9 (8), pp.e104499. ⟨10.1371/journal.pone.0104499⟩
Journal articles hal-01123224v1

Tous les modèles doivent-ils être identifiables ?

Rafael Munoz Tamayo , Pierre Blavy , Laurence Puillet , Olivier Martin , Jean-Baptiste Daniel , et al.
Journées Animation Scientifique du département PHASE, Institut National de Recherche Agronomique (INRA). UAR Département Physiologie Animale et Systèmes d'Elevage (0558)., Apr 2018, Rennes, France. pp.1
Conference papers hal-01840968v1

Modelling and identification of in vitro homoacetogenesis by human-colon bacteria

Rafael Munoz Tamayo , Béatrice Laroche , Marion Leclerc , Eric Walter
16. Mediterranean Conference on Control and Automation, 2008, Ajaccio, France
Conference papers hal-01204248v1
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Design of Optimal Experiments for Parameter Estimation of Microalgae Growth Models

Rafael Munoz Tamayo , Pierre Martinon , Gaël Bougaran , Francis Mairet , Olivier Bernard
International Symposium on Computer Applications to Biotechnology (CAB 2013), Dec 2013, Mumbai, India
Conference papers hal-00856749v1

A state of the art of metabolic networks of unicellular microalgae and cyanobacteria for biofuel production

Caroline Baroukh , Rafael Munoz Tamayo , Jean-Philippe Steyer , Olivier Bernard
Metabolic Engineering, 2015, 30, pp.49-60. ⟨10.1016/j.ymben.2015.03.019⟩
Journal articles hal-01163453v1
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Seven steps to enhance open science practices in animal science

Rafael Munoz Tamayo , Rafael Munoz Tamayo , Mohammed Gagaoua , Florence Gondret , E Tobias Krause , et al.
2022
Preprints, Working Papers, ... hal-03544902v2
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Towards the next generation models of the rumen microbiome for enhancing predictive power and guiding sustainable production strategies

Rafael Munoz Tamayo , Mohsen Davoudkhani , Ibrahim Fakih , C.E. Robles Rodriguez , Francesco Rubino , et al.
2022
Preprints, Working Papers, ... hal-03871472v1

Genome-scale network reconstruction of the predominant cellulolytic rumen bacterium Fibrobacter succinogenes S85

Fakih Ibrahim , Jeanne Got , Anne Siegel , Evelyne Forano , Rafael Munoz Tamayo
2021 - 12th International Symposium on Gut Microbiology, INRAE ; Rowett Institute UK, Oct 2021, En ligne, France
Conference papers hal-03402155v1
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On Parameter Interpretability of Phenomenological-Based Semiphysical Models

Laura Lema Perez , Rafael Munoz Tamayo , Jose Fernando Garcia Tirado , Hernan Alvarez
2018
Preprints, Working Papers, ... hal-02788220v1

A dynamic in silico model of rumen microbial fermentation and methane production

Rafael Munoz Tamayo , S. Ahvenjärvi , A.R. Bayat , I. Tapio
Book of Abstracts of the 74. Annual Meeting of the European Federation of Animal Science, INRAE, Aug 2023, Lyon, France. pp.325
Conference papers hal-04199208v1
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Review: to be or not to be an identifiable model. Is this a relevant question in animal science modelling?

Rafael Munoz Tamayo , Laurence Puillet , J. Daniel , Daniel Sauvant , O. Martin , et al.
Animal, 2018, 12 (04), pp.701 - 712. ⟨10.1017/S1751731117002774⟩
Journal articles hal-01526307v1

Towards the human intestinal microbiota phylogenetic core

Julien J. Tap , Stanislas S. Mondot , Florence F. Levenez , Eric Pelletier , Christophe C. Caron , et al.
Environmental Microbiology, 2009, 11 (10), pp.2574-2584. ⟨10.1111/j.1462-2920.2009.01982.x⟩
Journal articles istex hal-02667864v1
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Modélisation mathématique de la dégradation des hydrates de carbone dans le côlon humain

Rafael Munoz Tamayo
Mathématiques [math]. Université Paris Sud - Paris 11, 2010. Français. ⟨NNT : ⟩
Theses tel-02822888v1

Rumen methanogens exhibit specific energetic and growth dynamics: a modelling approach

Rafael Munoz Tamayo , Milka Popova , Diego Morgavi , Dominique Graviou , Jean Pierre Morel , et al.
10. International Symposium on the Nutrition of Herbivores (ISNH10), Sep 2018, Clermont-Ferrand, France. Cambridge University Press, Advances in Animal Biosciences, 9 (3), 2018, 10th. International Symposium on the Nutrition of Herbivores (ISNH10)
Poster communications hal-02734246v1

Combining a process-based model of rumen fermentation with methane production data from respiration chambers

Helen Kettle , Rafael Munoz Tamayo , R.J. Dewhurst
75. Annual Conference of the British Society of Animal Science (BSAS), Apr 2019, Edinburgh, United Kingdom. ⟨10.1017/S2040470019000013⟩
Conference papers hal-02193900v1
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Modelling the impact of the macroalgae Asparagopsis taxiformis on rumen microbial fermentation and methane production

Rafael Munoz Tamayo , Juana C Chagas , Mohammad Ramin , Sophie J Krizsan
Peer Community Journal, 2021, 1, pp.e7. ⟨10.24072/pcjournal.11⟩
Journal articles hal-03545126v1
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Dynamic data of body weight and feed intake in fattening pigs, and the determination of energetic allocation factors using a dynamic linear model

Guillaume Lenoir , K. Kashefifard , C. Chesnet , Loïc Flatres-Grall , Rafael Munoz Tamayo
Animal - Open Space, 2022, 1 (1), ⟨10.1016/j.anopes.2022.100014⟩
Journal articles hal-03747370v1
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Mechanistic modelling of in vitro fermentation and methane production by rumen microbiota

Rafael Munoz Tamayo , Sylvie Giger-Reverdin , Daniel Sauvant
Animal Feed Science and Technology, 2016, 220, pp.1-21. ⟨10.1016/j.anifeedsci.2016.07.005⟩
Journal articles hal-01349548v1
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Seven steps to enhance Open Science practices in animal science

Rafael Muñoz-Tamayo , Birte L Nielsen , Mohammed Gagaoua , Florence Gondret , E Tobias Krause , et al.
PNAS Nexus, 2022, 1 (3), pp.1-6. ⟨10.1093/pnasnexus/pgac106⟩
Journal articles hal-03749515v1