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Combining knowledge-based and sequence comparison approaches to elucidate metabolic functions, from pathways to communities

Arnaud Belcour
Bioinformatics [q-bio.QM]. Université Rennes 1, 2022. English. ⟨NNT : 2022REN1S061⟩
Theses tel-03924107v2

The soil microbiota diversity influences clubroot disease by modulation of Brassica napus and Plasmodiophora brassicae transcriptomes

Stéphanie Daval , Kévin Gazengel , Arnaud Belcour , Juliette Linglin , Anne-Yvonne Guillerm-Erckelboudt , et al.
International Phytobiomes Conference, Dec 2018, Montpellier, France
Poster communications hal-03348616v1

Influence de la diversité du microbiome du sol sur l'agent pathogène tellurique responsable de la hernie des crucifères

Arnaud Belcour , Kévin Gazengel , Lionel Lebreton , Anne-Yvonne Guillerm-Erckelboudt , Juliette Linglin , et al.
Journées d'animation du réseau PhytoMic, Nov 2017, Paris, France
Poster communications hal-03348606v1

Metabolic complementarity applied to the screening of microbiota and the identification of key species

Clémence Frioux , Arnaud Belcour , Méziane Aite , Anthony Bretaudeau , Falk Hildebrand , et al.
CMSB 2021 - 19th International Conference on Computational Methods in Systems Biology, Sep 2021, Bordeaux, France. pp.1-27
Conference papers hal-03440212v1

The soil microbiota diversity influences clubroot disease by modulation of host plant and pathogen transcriptomes

Stéphanie Daval , Kévin Gazengel , Arnaud Belcour , Juliette Linglin , Anne-Yvonne Guillerm-Erckelboudt , et al.
Pathobiome, Mar 2018, Ajaccio, France
Poster communications hal-03348609v1
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EsMeCaTa: Estimating metabolic capabilities from taxonomic affiliations

Arnaud Belcour , Baptiste Ruiz , Clémence Frioux , Samuel Blanquart , Anne Siegel
2022
Preprints, Working Papers, ... hal-03697249v1

Comparative Transcriptome Analysis Provides Insights into Response of Ulva compressa to Fluctuating Salinity Conditions

Qikun Xing , Guiqi Bi , Min Cao , Arnaud Belcour , Méziane Aite , et al.
Journal of Phycology, 2021, 57 (4), pp.1295-1308. ⟨10.1111/jpy.13167⟩
Journal articles hal-03334031v1

Metabolic complementarity applied to the screening of microbiota and the identification of key species

Clémence Frioux , Arnaud Belcour , Meziane Aite , Anthony Bretaudeau , Falk Hildebrand , et al.
JOBIM 2021 - Journées Ouvertes en Biologie, Informatique et Mathématiques, Jul 2021, Paris, France
Conference papers hal-03440232v1

Metabolic complementarity applied to the screening of microbiota and the identification of key species

Clémence Frioux , Arnaud Belcour , Méziane Aite , Anthony Bretaudeau , Falk Hildebrand , et al.
MPA 2021 - 8th Metabolic Pathway Analysis, Aug 2021, Knoxville, TN, United States. pp.1-27
Conference papers hal-03440221v1
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Soil microbiota influences clubroot disease by modulating Plasmodiophora brassicae and Brassica napus transcriptomes

Stéphanie Daval , Kévin Gazengel , Arnaud Belcour , Juliette J. Linglin , Anne-Yvonne Guillerm-Erckelboudt , et al.
2020
Preprints, Working Papers, ... hal-02487262v1
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Metage2Metabo: metabolic complementarity applied to genomes of large-scale microbiotas for the identification of keystone species

Arnaud Belcour , Clémence Frioux , Méziane Aite , Anthony Bretaudeau , Falk Hildebrand , et al.
JOBIM 2020 - Journées Ouvertes de Biologie, Informatique et Mathématique, Jun 2020, Montpellier / Virtual, France. ⟨10.1101/803056⟩
Poster communications hal-03151934v1
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Computational analysis of the Plasmodiophora brassicae genome: mitochondrial sequence description and metabolic pathway database design

Stéphanie Daval , Arnaud Belcour , Kévin Gazengel , Ludovic Legrand , Jerome Gouzy , et al.
Genomics, 2019, 111 (6), pp.1629-1640. ⟨10.1016/j.ygeno.2018.11.013⟩
Journal articles hal-01943250v1
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Metage2Metabo, microbiota-scale metabolic complementarity for the identification of key species

Arnaud Belcour , Clémence Frioux , Méziane Aite , Anthony Bretaudeau , Falk Hildebrand , et al.
Journal articles hal-02395024v2
Image document

Soil microbiota influences clubroot disease by modulating Plasmodiophora brassicae and Brassica napus transcriptomes

Stéphanie Daval , Kévin Gazengel , Arnaud Belcour , Juliette Linglin , Anne-Yvonne Guillerm-Erckelboudt , et al.
Microbial Biotechnology, 2020, 13 (5), pp.1648-1672. ⟨10.1111/1751-7915.13634⟩
Journal articles hal-02624824v2
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Inferring Biochemical Reactions and Metabolite Structures to Understand Metabolic Pathway Drift

Arnaud Belcour , Jean Girard , Méziane Aite , Ludovic Delage , Camille Trottier , et al.
iScience, 2020, 23 (2), pp.100849. ⟨10.1016/j.isci.2020.100849⟩
Journal articles hal-01943880v2
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Inferring and comparing metabolism across heterogeneous sets of annotated genomes using AuCoMe

Arnaud Belcour , Jeanne Got , Méziane Aite , Ludovic Delage , Jonas Collén , et al.
Genome Research, 2023, 33, pp.972 - 987. ⟨10.1101/gr.277056.122⟩
Journal articles hal-04192851v1

Machine Learning classification performance on mechanistic representations of the gut microbiota built from abundance profiles

Baptiste Ruiz , Arnaud Belcour , Samuel Blanquart , Isabelle Luron Le Huërou-Luron , Sylvie Buffet-Bataillon , et al.
Journées Ouvertes en Biologie, Informatique et Mathématiques (JOBIM), Jul 2022, Rennes, France. , pp.181, 2022, Proceedings
Poster communications hal-04155624v1
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Inferring and comparing metabolism across heterogeneous sets of annotated genomes using AuCoMe

Arnaud Belcour , Jeanne Got , Méziane Aite , Ludovic Delage , Jonas Collen , et al.
2023
Preprints, Working Papers, ... hal-03778267v2
Image document

Genome–Scale Metabolic Networks Shed Light on the Carotenoid Biosynthesis Pathway in the Brown Algae Saccharina japonica and Cladosiphon okamuranus

Delphine Nègre , Méziane Aite , Arnaud Belcour , Clémence Frioux , Loraine Brillet-Guéguen , et al.
Antioxidants , 2019, 8 (11), pp.564. ⟨10.3390/antiox8110564⟩
Journal articles hal-02395080v1