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Genomic and transcriptomic resources of two Lepidoptera: the Notodontidae Thaumetopoea pityocampa and the Crambidae Ostrinia scapulalis

Bernhard Gschloessl , Franck Dorkeld , Philippe Audiot , Anthony Bretaudeau , Christian Burban , et al.
10. International Workshop on the Molecular Biology and Genetics of the Lepidoptera, Aug 2019, Crête, Greece. , 2018
Poster communications hal-02786428v1
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Tripal v3: an ontology-based toolkit for construction of FAIR biological community databases.

Shawna Spoor , Chun-Huai Cheng , Lacey-Anne Sanderson , Bradford Condon , Abdullah Almsaeed , et al.
Database - The journal of Biological Databases and Curation, 2019, 2019, pp.baz077. ⟨10.1093/database/baz077⟩
Journal articles hal-02318314v1

e-Science in France, a Life science Western story

Yvan Le Bras , Aurélien Roult , Cyril Monjoeaud , Bahin Mathieu , Olivier Quenez , et al.
Galaxy Community Conference (GCC2014), Jun 2014, Baltimore, United States
Poster communications hal-01102432v1
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Comparative genomic analysis of Clubroot resistance in the Brassicaceae family

Aurélie Evrard , Charles Bettembourg , Olivier Dameron , Olivier Filangi , Anthony Bretaudeau , et al.
Brassica2016, Oct 2016, Melbourne, Australia.
Poster communications hal-01391707v1

Soybean aphid biotype 1 genome: Insights into the invasive biology and adaptive evolution of a major agricultural pest

Rosanna Giordano , Ravi Kiran Donthu , Aleksey Zimin , Irene Consuelo Julca Chavez , Toni Gabaldon , et al.
Insect Biochemistry and Molecular Biology, 2020, 120, pp.1-24. ⟨10.1016/j.ibmb.2020.103334⟩
Journal articles hal-03065382v1
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Chromosomal scale assembly of parasitic wasp genome reveals symbiotic virus colonization

Jérémy Gauthier , Hélène Boulain , Joke J F A van Vugt , Lyam Baudry , Emma Persyn , et al.
Communications Biology, 2021, 4 (1), pp.1-15. ⟨10.1038/s42003-020-01623-8⟩
Journal articles hal-03127732v1
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Dosage compensation and sex-specific epigenetic landscape of the X chromosome in the pea aphid.

Gautier Richard , Fabrice Legeai , Nathalie Prunier-Leterme , Anthony Bretaudeau , Denis Tagu , et al.
Epigenetics & Chromatin, 2017, 10 (1), pp.1-17. ⟨10.1186/s13072-017-0137-1⟩
Journal articles hal-01555242v1
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Adaptation by copy number variation increases insecticide resistance in fall armyworms

Ki Woong Nam , Sylvie Gimenez , Frederique Hilliou , Carlos A Blanco , Sabine Hänniger , et al.
2020
Preprints, Working Papers, ... hal-02945633v1
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Functional insights from the GC-poor genomes of two aphid parasitoids, Aphidius ervi and Lysiphlebus fabarum

Alice B. Dennis , Gabriel I. Ballesteros , Stéphanie Robin , Lukas Schrader , Jens Bast , et al.
2019
Preprints, Working Papers, ... hal-02788571v1

BIPAA/Askomics, a new and easy approach for querying genomics and epigenomics elements in interaction

Fabrice Legeai , Charles Bettembourg , Anthony Bretaudeau , Yvanne Chaussin , Olivier Dameron , et al.
XXVth International Congress of Entomology 2016, Sep 2016, Orlando, Florida, United States
Conference papers hal-01391080v1

Integration and query of biological datasets with Semantic Web technologies: AskOmics

Aurélie Evrard , Charles Bettembourg , Mélanie Jubault , Olivier Dameron , Olivier Filangi , et al.
Journées Ouvertes Biologie, Informatique et Mathématiques (JOBIM 2016), Jun 2016, Lyon, France
Poster communications hal-01391087v1
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AskoR, A R Package for Easy RNASeq Data Analysis

Susete Alves Carvalho , Kévin Gazengel , Anthony Bretaudeau , Stéphanie Robin , Stéphanie Daval , et al.
IECE 2021 - 1st International Electronic Conference on Entomology, Jul 2021, Virtual, France. pp.1-8, ⟨10.3390/IECE-10646⟩
Conference papers hal-03347665v1

Automatic update of reference data in Galaxy using BioMAJ.

Anthony Bretaudeau , Yvan Le Bras , Cyril Monjeaud , Olivier Collin
Galaxy Day 2014, Institut Français de Bioinformatique, Dec 2014, Paris, France
Conference papers hal-01102421v1
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AnnotQTL: a new tool to gather functional and comparative information on a genomic region

Frédéric Lecerc , Anthony Bretaudeau , Olivier Sallou , Colette Désert , Yuna Blum , et al.
Nucleic Acids Research, 2011, 39 (Suppl 2), open access. ⟨10.1093/nar/gkr361⟩
Journal articles hal-00597398v1
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Positive selection alone is sufficient for whole genome differentiation at the early stage of speciation process in the fall armyworm

Ki Woong Nam , Sandra Nhim , Stéphanie Robin , Anthony Bretaudeau , Nicolas Nègre , et al.
BMC Evolutionary Biology, 2020, 20 (1), ⟨10.1186/s12862-020-01715-3⟩
Journal articles hal-03099735v1
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Genomic differentiation is initiated without physical linkage among targets of divergent selection in Fall armyworms

Ki Woong Nam , Sandra Nhim , Stéphanie Robin , Anthony Bretaudeau , Nicolas Nègre , et al.
2018
Preprints, Working Papers, ... hal-02788771v1
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Functional insights from the GC-poor genomes of two aphid parasitoids, "Aphidius ervi" and "Lysiphlebus fabarum

Alice Dennis , Gabriel Ballesteros , Stéphanie Robin , Lukas Schrader , Jens Bast , et al.
BMC Genomics, 2020, 21 (Art. 376), pp.1-27. ⟨10.1186/s12864-020-6764-0⟩
Journal articles hal-02649295v1

LepidoDB Information system

Emmanuelle d'Alençon , Fabrice Legeai , Anthony Bretaudeau , Stéphanie Robin , Nicolas Negre , et al.
2017
Other publications hal-02154691v1

SfruDB database :Spodoptera frugiperda genome assembly, Version 5

Ki Woong Nam , Anthony Bretaudeau , Stéphanie Robin
2018
Other publications hal-02154692v1
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Genome scans on experimentally evolved populations reveal candidate regions for adaptation to plant resistance in the potato cyst nematode Globodera pallida.

Delphine Eoche-Bosy , Matthieu Gautier , Magali Esquibet , Fabrice Legeai , Anthony Bretaudeau , et al.
Molecular Ecology, 2017, 26 (18), pp.4700-4711. ⟨10.1111/mec.14240⟩
Journal articles hal-01605681v2

Metabolic complementarity applied to the screening of microbiota and the identification of key species

Clémence Frioux , Arnaud Belcour , Méziane Aite , Anthony Bretaudeau , Falk Hildebrand , et al.
CMSB 2021 - 19th International Conference on Computational Methods in Systems Biology, Sep 2021, Bordeaux, France. pp.1-27
Conference papers hal-03440212v1
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Improvement of the assembly of heterozygous genomes of non-model organisms

Anaïs Gouin , Anthony Bretaudeau , Emmanuelle d'Alençon , Claire Lemaitre , Fabrice Legeai
Genome Informatics, Oct 2015, Cold Spring Harbor Laboratory, United States. 2015
Poster communications hal-01231793v1
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The duplicated genes database: identification and functional annotation of co-localised duplicated genes across genomes

Marion Ouedraogo , Charles Bettembourg , Anthony Bretaudeau , Olivier Sallou , Christian Diot , et al.
PLoS ONE, 2012, 7 (11), pp.e50653. ⟨10.1371/journal.pone.0050653⟩
Journal articles hal-00841104v1

Integration of Linked Data into Galaxy using Askomics

Xavier Garnier , Olivier Dameron , Olivier Filangi , Fabrice Legeai , Anthony Bretaudeau
Galaxy Community Conference, Jun 2017, Montpellier, France
Conference papers hal-01576870v1
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Rapid transcriptional plasticity of duplicated gene clusters enables a clonally reproducing aphid to colonise diverse plant species

Thomas C. Mathers , Yazhou Chen , Gemy Kaithakottil , Fabrice Legeai , Sam T. Mugford , et al.
Genome Biology, 2017, 18 (1), pp.27. ⟨10.1186/s13059-016-1145-3⟩
Journal articles hal-01500475v1
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PHYMYCO-DB: A Curated Database for Analyses of Fungal Diversity and Evolution

Stéphane Mahé , Marie Duhamel , Thomas Le Calvez , Laëtitia Guillot , Ludmila Sarbu , et al.
PLoS ONE, 2012, 7 (9), pp.e43117. ⟨10.1371/journal.pone.0043117⟩
Journal articles hal-00756250v1
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A study of phylloxera transcriptomes, comparing root and leaf feeding morphs

Claude Rispe , Daciana Papura , Fabrice Legeai , Julie Jaquiéry , Anthony Bretaudeau , et al.
6. International Phylloxera Symposium, Institut National de Recherche Agronomique (INRA). UMR Ecophysiologie et Génomique Fonctionnelle de la Vigne (1287)., Aug 2013, Bordeaux, France. 59 p
Conference papers hal-01208647v1
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AnnotQTL: a new tool to gather functional and comparative information on a genomic region

Frédéric Lecerf , Anthony Bretaudeau , Olivier Sallou , Colette Désert , Yuna Blum , et al.
12. Journées Ouvertes en Biologie, Informatique et Mathématiques, Jun 2011, Paris, France. 2011, JOBIM 2011
Poster communications hal-02746728v1

Assemblage de génomes

Anthony Bretaudeau , Fabrice Legeai
Principes des techniques de biologie moléculaire et génomique : 3e édition revue et augmentée, Quae, 2018, Savoir Faire, 978-2-7592-2389-3
Book sections hal-03319003v1
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Adaptation by copy number variation increases insecticide resistance in the fall armyworm

Sylvie Gimenez , Heba Abdelgaffar , Gaelle Le Goff , Frédérique Hilliou , Carlos Blanco , et al.
Communications Biology, 2020, 3 (1), pp.1-10. ⟨10.1038/s42003-020-01382-6⟩
Journal articles hal-03065279v1