Matching Pharmacogenomic Knowledge: Particularities, Results, and Perspectives
Pierre Monnin
,
Adrien Coulet
17th International Workshop on Ontology Matching : OM-2022 , Oct 2022, Virtual, China
Conference papers
hal-03835712v1
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PGxCorpus and PGxLOD: two shared resources for knowledge management in pharmacogenomics
Pierre Monnin
,
Joël Legrand
,
Adrien Coulet
JOBIM 2022 - Journées Ouvertes en Biologie, Informatique et Mathématiques , Jul 2022, Rennes, France.
, JOBIM 2022 Proceedings - Posters, Démos
Poster communications
hal-03754888v1
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Combiner plongements de graphes et clustering pour l'alignement de connaissances pharmacogénomiques
Pierre Monnin
,
Chedy Raïssi
,
Amedeo Napoli
,
Adrien Coulet
Santé & IA 2022 - Journée Santé et Intelligence Artificielle (Evènement affilié à PFIA 2022) , Jun 2022, Saint-Etienne, France
Conference papers
hal-03754776v1
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Projet ANR (2016-2021) « PractiKPharma » : extraction, comparaison et découverte de connaissances en pharmacogénomique
Pierre Monnin
,
Adrien Coulet
Journal articles
hal-03669026v1
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Étudier les mécanismes des effets indésirables des médicaments avec l'IA explicable : expériences avec la fouille de graphes de connaissances
Pierre Monnin
,
Adrien Coulet
Bulletin de l'Association Française pour l'Intelligence Artificielle , 2022
Journal articles
hal-03669065v1
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Discovering alignment relations with Graph Convolutional Networks: A biomedical case study
Pierre Monnin
,
Chedy Raïssi
,
Amedeo Napoli
,
Adrien Coulet
Journal articles
hal-03452182v1
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Syntax-based transfer learning for the task of biomedical relation extraction
Joël Legrand
,
Yannick Toussaint
,
Chedy Raïssi
,
Adrien Coulet
Journal articles
hal-03330823v1
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Investigating ADR mechanisms with Explainable AI: a feasibility study with knowledge graph mining
Emmanuel Bresso
,
Pierre Monnin
,
Cédric Bousquet
,
François-Elie Calvier
,
Ndeye-Coumba Ndiaye
,
et al.
Journal articles
hal-03240476v1
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Expérimentations autour des architectures d'apprentissage par transfert pour l'extraction de relations biomédicales
Walid Hafiane
,
Joël Legrand
,
Yannick Toussaint
,
Adrien Coulet
EGC 2021 - 21ème édition de la conférence "Extraction et Gestion des Connaissances" , Jan 2021, Montpellier / Virtuel, France
Conference papers
hal-03073601v1
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French FastContext: a Publicly Accessible System for Detecting Negation, Temporality and Experiencer in French Clinical Notes
Mehdi Mirzapour
,
Amine Abdaoui
,
Andon Tchechmedjiev
,
William Digan
,
Sandra Bringay
,
et al.
Journal articles
hal-03184001v1
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Matching and mining in knowledge graphs of the Web of data - Applications in pharmacogenomics
Pierre Monnin
Theses
tel-03122326v1
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Knowledge-Based Matching of $n$-ary Tuples
Pierre Monnin
,
Miguel Couceiro
,
Amedeo Napoli
,
Adrien Coulet
Conference papers
hal-02493067v1
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Tackling scalability issues in mining path patterns from knowledge graphs: a preliminary study
Pierre Monnin
,
Emmanuel Bresso
,
Miguel Couceiro
,
Malika Smaïl-Tabbone
,
Amedeo Napoli
,
et al.
ALGOS 2020 - 1st International Conference on Algebras, Graphs and Ordered Sets , Aug 2020, Nancy, France
Conference papers
hal-02913224v1
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Integrating the Comparative Toxicogenomic Database in a Human Pharmacogenomic Resource.
François-Élie Calvier
,
Cedric Bousquet
30th Medical Informatics Europe conference (MIE) , Apr 2020, Geneva, Switzerland. pp.267-271,
⟨10.3233/SHTI200164⟩
Conference papers
hal-03130189v1
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PGxCorpus, a manually annotated corpus for pharmacogenomics
Joël Legrand
,
Romain Gogdemir
,
Cedric Bousquet
,
Kevin Dalleau
,
Marie-Dominique Devignes
,
et al.
Journal articles
hal-02547607v1
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Mises en correspondances de données, textes et connaissances pour la découverte de connaissances biomédicales
Adrien Coulet
Base de données [cs.DB]. Université de Lorraine, 2019
Habilitation à diriger des recherches
tel-02429926v2
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Evaluating the impact of text duplications on a corpus of more than 600,000 clinical narratives in a French Hospital
William Digan
,
Maxime Wack
,
Vincent Looten
,
Antoine Neuraz
,
Anita Burgun
,
et al.
medinfo 2019 , Aug 2019, Lyon, France
Conference papers
hal-02265124v1
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Providing Molecular Characterization for Unexplained Adverse Drug Reactions
François-Élie Calvier
,
Pierre Monnin
,
Miguel Boland
,
Patryk Jarnot
,
Emmanuel Bresso
,
et al.
2019
Preprints, Working Papers, ...
hal-02196134v1
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Knowledge Reconciliation with Graph Convolutional Networks: Preliminary Results
Pierre Monnin
,
Chedy Raïssi
,
Amedeo Napoli
,
Adrien Coulet
DL4KG2019 - Workshop on Deep Learning for Knowledge Graphs , Jun 2019, Portoroz, Slovenia
Conference papers
hal-02155546v1
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PGxO and PGxLOD: a reconciliation of pharmacogenomic knowledge of various provenances, enabling further comparison
Pierre Monnin
,
Joël Legrand
,
Graziella Husson
,
Patrice Ringot
,
Andon Tchechmedjiev
,
et al.
Journal articles
hal-02103899v1
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Discovering and Comparing Relational Knowledge, the Example of Pharmacogenomics
Pierre Monnin
Proceedings of the EKAW Doctoral Consortium 2018 co-located with the 21st International Conference on Knowledge Engineering and Knowledge Management (EKAW 2018) , 2019
Other publications
hal-01955424v1
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Cooperation of bio-ontologies for the classification of genetic intellectual disabilities : a diseasome approach
Gabin Personeni
,
Marie-Dominique Devignes
,
Malika Smaïl-Tabbone
,
Philippe Jonveaux
,
Céline Bonnet
,
et al.
Proceedings of the 11th International Conference on Semantic Web Applications and Tools for Healthcare and Life Sciences (SWAT4HCLS 2018) , Dec 2018, Antwerp, Belgium
Conference papers
hal-01925471v1
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SIFR Annotator: Ontology-Based Semantic Annotation of French Biomedical Text and Clinical Notes
Andon Tchechmedjiev
,
Amine Abdaoui
,
Vincent Emonet
,
Stella Zevio
,
Clement Jonquet
Journal articles
lirmm-01934127v1
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Syntax-based Transfer Learning for the Task of Biomedical Relation Extraction
Joël Legrand
,
Yannick Toussaint
,
Chedy Raïssi
,
Adrien Coulet
LOUHI 2018 - The Ninth International Workshop on Health Text Mining and Information Analysis , Oct 2018, Brussels, Belgium
Conference papers
hal-01869071v1
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Predicting the need for a reduced drug dose, at first prescription
Adrien Coulet
,
Nigam H. Shah
,
Maxime Wack
,
Mohammad Chawki
,
Nicolas Jay
,
et al.
Journal articles
hal-01901566v1
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Building an effective and efficient background knowledge resource to enhance ontology matching
Amina Annane
,
Zohra Bellahsene
,
Faical Azouaou
,
Clement Jonquet
Journal articles
hal-01809627v2
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Combining Concept Annotation and Pattern Structures for Guiding Ontology Mapping
Pierre Monnin
,
Amedeo Napoli
,
Adrien Coulet
FCA4AI@IJCAI2018 - 6th International Workshop "What can FCA do for Artificial Intelligence?" , Jul 2018, Stockholm, Sweden
Conference papers
hal-01858391v1
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Découverte d'associations entre Evénements Indésirables Médicamenteux par les structures de patrons et les ontologies
Gabin Personeni
,
Emmanuel Bresso
,
Marie-Dominique Devignes
,
Michel Dumontier
,
Malika Smaïl-Tabbone
,
et al.
Journée I.A. et Santé , Jul 2018, Nancy, France
Conference papers
hal-01872312v1
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Enhanced Functionalities for Annotating and Indexing Clinical Text with the NCBO Annotator+
Andon Tchechmedjiev
,
Amine Abdaoui
,
Vincent Emonet
,
Soumia Melzi
,
Jitendra Jonnagaddala
,
et al.
Journal articles
lirmm-01680514v1
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Data-Interlinking: the Seed of Knowledge Reconciliation in Pharmacogenomics
Pierre Monnin
,
Amedeo Napoli
,
Adrien Coulet
2018
Preprints, Working Papers, ...
hal-01955262v1
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