Article Dans Une Revue PeerJ Année : 2021

Anti-clustering in the national SARS-CoV-2 daily infection counts

Résumé

The noise in daily infection counts of an epidemic should be super-Poissonian due to intrinsic epidemiological and administrative clustering. Here, we use this clustering to classify the official national SARS-CoV-2 daily infection counts and check for infection counts that are unusually anti-clustered. We adopt a one-parameter model of φ ′ i infections per cluster, dividing any daily count n i into n i /φ ′ i 'clusters', for 'country' i. We assume that n i /φ ′ i on a given day j is drawn from a Poisson distribution whose mean is robustly estimated from the 4 neighbouring days, and calculate the inferred Poisson probability P ′ i j of the observation. The P ′ i j values should be uniformly distributed. We find the value φ i that minimises the Kolmogorov-Smirnov distance from a uniform distribution. We investigate the (φ i , N i ) distribution, for total infection count N i . We consider consecutive count sequences above a threshold of 50 daily infections. We find that most of the daily infection count sequences are inconsistent with a Poissonian model. Most are found to be consistent with the φ i model. The 28-, 14-and 7-day least noisy sequences for several countries are best modelled as sub-Poissonian, suggesting a distinct epidemiological family. The 28-day least noisy sequence of Algeria has a preferred model that is strongly sub-Poissonian, with φ 28 i < 0.1. Tajikistan, Turkey, Russia, Belarus, Albania, United Arab Emirates, and Nicaragua have preferred models that are also sub-Poissonian, with φ 28 i < 0.5. A statistically significant (P τ < 0.05) correlation was found between the lack of media freedom in a country, as represented by a high Reporters sans fronti ères Press Freedom Index (PFI 2020 ), and the lack of statistical noise in the country's daily counts. The φ i model appears to be an effective detector of suspiciously low statistical noise in the national SARS-CoV-2 daily infection counts.

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hal-05025135 , version 1 (08-04-2025)

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Boudewijn F Roukema. Anti-clustering in the national SARS-CoV-2 daily infection counts. PeerJ, 2021, 9, pp.e11856. ⟨10.7717/peerj.11856⟩. ⟨hal-05025135⟩
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