{
    "@context": [
        "https:\/\/doi.org\/doi:10.5063\/schema\/codemeta-2.0",
        "http:\/\/schema.org"
    ],
    "@type": "SoftwareSourceCode",
    "name": "thirdkind\r\nDrawing reconciled phylogenetic trees allowing 1, 2 or 3 reconciliation levels",
    "description": "Motivation\r\n\r\nReconciliation between a host and its symbiont phylogenies or between a species and a gene phylogenies is a prevalent approach in evolution, however no simple generic tool (i.e. virtually usable by all reconciliation software, from host\/symbiont to species\/gene comparisons) is available to visualize reconciliation results. Moreover there is no tool to visualize 3-levels reconciliations, i.e. to visualize 2 nested reconciliations as for example in a host\/symbiont\/gene complex.\r\nResults\r\n\r\nThirdkind is a light and easy to install command line software producing svg files displaying reconciliations, including 3-levels reconciliations. It takes a standard format recPhyloXML as input, and is thus usable with most reconciliation software.",
    "dateCreated": "2025-03-10",
    "datePublished": "2025-03-10",
    "license": [
        "CeCILL Free Software License Agreement v2.1"
    ],
    "url": "https:\/\/hal.science\/hal-04984924",
    "identifier": [
        {
            "@type": "hal",
            "propertyID": "https:\/\/hal.science\/hal-04984924",
            "value": "hal-04984924"
        },
        {
            "@type": "doi",
            "propertyID": "https:\/\/dx.doi.org\/10.1093\/bioinformatics\/btac062\/6525213",
            "value": "10.1093\/bioinformatics\/btac062\/6525213"
        },
        {
            "@type": "swhid",
            "propertyID": "https:\/\/archive.softwareheritage.org\/swh:1:dir:93625ea4d591ec5d729defa4dae8460ae3c8d6e6;origin=https:\/\/github.com\/simonpenel\/thirdkind;visit=swh:1:snp:1507a99394508b95a092898d0fee301fe23d6fc3;anchor=swh:1:rev:dbd88eac9ca7e19221a1fd2e163d446c41e41d86",
            "value": "swh:1:dir:93625ea4d591ec5d729defa4dae8460ae3c8d6e6;origin=https:\/\/github.com\/simonpenel\/thirdkind;visit=swh:1:snp:1507a99394508b95a092898d0fee301fe23d6fc3;anchor=swh:1:rev:dbd88eac9ca7e19221a1fd2e163d446c41e41d86"
        }
    ],
    "applicationCategory": [
        "sdv",
        "info",
        "sde"
    ],
    "keywords": [
        "evolution",
        "Phylogenetic reconciliation",
        "Phylogenetic approach",
        "Host parasite interactions",
        "Reconciliation Algorithms",
        "Phylogeny &amp;amp"
    ],
    "codeRepository": "https:\/\/github.com\/simonpenel\/thirdkind",
    "programmingLanguage": [
        "Rust"
    ],
    "operatingSystem": [
        "Linux",
        "Mac OS",
        "Windows"
    ],
    "version": "1",
    "dateModified": "2025-03-14",
    "developmentStatus": "Actif",
    "author": [
        {
            "@type": "Role",
            "roleName": "aut",
            "author": {
                "@type": "Person",
                "@id": [
                    "0000-0003-1550-5477"
                ],
                "givenName": "Simon",
                "familyName": "Penel",
                "affiliation": [
                    {
                        "@type": "Organization",
                        "name": "LBBE"
                    }
                ]
            }
        }
    ],
    "contributor": [
        {
            "@type": "Person",
            "givenName": "Simon",
            "familyName": "Penel"
        }
    ]
}