To improve the efficiency and performance of a photovoltaic system (PV) an observer-based fuzzy controller design methodology is provided in the study. The desired controller is achieved by employing a combination of linear matrix inequalities (LMIs). The system consists of a photovoltaic generator (PVG) connected to a boost converter. A battery is linked to the boost converter to stock additional energy for further use. A fuzzy controller based on a T–S fuzzy type observer that guarantees a predefined L2 performance is suggested to achieve maximum power point tracking (MPPT) even under changing weather conditions. An optimal trajectory should be tracked to ensure maximum power operation. For this aim, a specific reference fuzzy model is proposed to create the aimed trajectories. Using this method, the system dynamics are precisely reproduced over a large range of operations. The whole T–S fuzzy methodology, suggested in this paper, aims to ensure the most efficient energy recovery to recharge a battery under partially shaded conditions, resulting in high system efficiency. The proposed method is simulated with MATLAB /SIMULINK and the simulation results, with realistic reference trajectories, are driven while taking into account climate variations. The analysis of these simulations, along with a comparison with two other commonly used approaches, led to the conclusion that the suggested strategy succeeded in reducing the tracking time, as well as eliminating the oscillation that often occurs around maximum power point (MPP).