Polarization optics, which characterize the orientation of the electromagnetic field through Stokes vectors formalism, have been effectively used in lidar remote sensing to detect particles that differ in shape, such as mineral dust or pollen. In this study, for the first time, we explore the capability of polarization optics to distinguish the light-backscattering patterns of pollen and fungal spores, two complex-shaped particles that vary significantly in surface structure. A unique laboratory polarimeter operating at lidar backscattering at 180.0° was conducted to assess their light depolarization property in laboratory ambient air. If, at the precise lidar backscattering angle of 180.0°, the depolarization ratios of pollen and fungal spores were difficult to differentiate, slight deviations from 180.0° allowed us to reveal separate scattering matrices for pollen and fungal spores. This demonstrates that polarization optics can unambiguously differentiate these particles based on their light-(back)scattering properties. These findings are consistent at both 532 and 1064 nm. This non-invasive, real-time technique is valuable for environmental monitoring, where rapid identification of airborne allergens is essential, as well as in agricultural and health sectors. Polarization-based light scattering thus offers a valuable method for characterizing such atmospheric particles, aiding in managing airborne contaminants.