At fast-spreading centers, faults develop within the axial summit trough (AST; 0 to 250 m around the axis) primarily by diking-induced deformation originating from the axial magma lens (AML). The formation of the prominent abyssal-hill-bounding faults beyond the axial high (>2,000 m) is typically associated with the unbending of the lithosphere as it cools and spreads away from the AST. The presence of faults is rarely mapped between these two thermally distinct zones, where the lithosphere is still too hot for the faults to be linked with the process of thermal cooling and outside of the AST where the accretional diking process dominates the ridge axis. Here, we reveal a remarkable vertical alignment between the distinct morphological features of the magma body and the orientation of these faults, by comparison of 3-D seismic imagery and bathymetry data collected at the East Pacific Rise (EPR) 9°50’N. The spatial coincidence and asymmetric nucleation mode of the mapped faults represent the most direct evidence for magmatically induced faulting near the ridge axis, providing pathways for hydrothermalism and magma emplacement, helping to build the crust outside of the AST. The high-resolution seafloor and subsurface images also enable revised tectonic strain estimates, which shows that the near-axis tectonic component of seafloor spreading at the EPR is an order of magnitude smaller than previously thought with close to negligible contribution of lava buried faults to spreading.