Integrative single-cell chromatin and transcriptome analysis of human plasma cell differentiation - Archive ouverte HAL
Article Dans Une Revue Blood Année : 2024

Integrative single-cell chromatin and transcriptome analysis of human plasma cell differentiation

Elina Alaterre
  • Fonction : Auteur
Sara Ovejero
Caroline Bret
Laure Dutrieux
  • Fonction : Auteur
Dassou Sika
  • Fonction : Auteur
Raul Fernandez Perez
Marion Espéli
  • Fonction : Auteur
Thierry Fest
Michel Cogné
José Ignacio Martin-Subero
  • Fonction : Auteur
Pierre Milpied
Giacomo Cavalli

Résumé

Abstract Plasma cells (PCs) are highly specialized cells representing the end stage of B-cell differentiation. We have shown that PC differentiation can be reproduced in vitro using elaborate culture systems. The molecular changes occurring during PC differentiation are recapitulated in this in vitro differentiation model. However, a major challenge exists to decipher the spatiotemporal epigenetic and transcriptional programs that drive the early stages of PC differentiation. We combined single cell (sc) RNA sequencing (RNA-seq) and assay for transposase-accessible chromatin with high throughput sequencing (scATAC-seq) to decipher the trajectories involved in PC differentiation. ScRNA-seq experiments revealed a strong heterogeneity of the preplasmablastic and plasmablastic stages. Among genes that were commonly identified using scATAC-seq and scRNA-seq, we identified several transcription factors with significant stage specific potential importance in PC differentiation. Interestingly, differentially accessible peaks characterizing the preplasmablastic stage were enriched in motifs of BATF3, FOS and BATF, belonging to activating protein 1 (AP-1) transcription factor family that may represent key transcriptional nodes involved in PC differentiation. Integration of transcriptomic and epigenetic data at the single cell level revealed that a population of preplasmablasts had already undergone epigenetic remodeling related to PC profile together with unfolded protein response activation and are committed to differentiate in PC. These results and the supporting data generated with our in vitro PC differentiation model provide a unique resource for the identification of molecular circuits that are crucial for early and mature PC maturation and biological functions. These data thus provide critical insights into epigenetic- and transcription–mediated reprogramming events that sustain PC differentiation.

Dates et versions

hal-04704599 , version 1 (21-09-2024)

Identifiants

Citer

Elina Alaterre, Sara Ovejero, Caroline Bret, Laure Dutrieux, Dassou Sika, et al.. Integrative single-cell chromatin and transcriptome analysis of human plasma cell differentiation. Blood, 2024, 144 (5), pp.496-509. ⟨10.1182/blood.2023023237⟩. ⟨hal-04704599⟩
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