Web of venom: exploration of big data resources in animal toxin research - Archive ouverte HAL
Journal Articles GigaScience Year : 2024

Web of venom: exploration of big data resources in animal toxin research

Björn Marcus von Reumont
Gregor Anderluh
Figen Caliskan
Maria Luisa Chiusano
Jacob Fröhlich
Evroula Hapeshi
Benjamin-Florian Hempel
Maria P Ikonomopoulou
Florence Jungo
Tarcisio Mendes de Farias
Maria Vittoria Modica
Yehu Moran
Ayse Nalbantsoy
Jan Procházka
Andrea Tarallo
Fiorella Tonello
Rui Vitorino
Mark Lawrence Zammit

Abstract

Research on animal venoms and their components spans multiple disciplines, including biology, biochemistry , bioinformatics, pharmacology, medicine, and more. Manipulating and analyzing the diverse array of data required for venom research can be challenging, and relevant tools and resources are often dispersed across different online platforms, making them less accessible to nonexperts. In this article , we address the multifaceted needs of the scientific community involved in venom and toxin-related research by identifying and discussing web resources, data bases, and tools commonly used in this field. We have compiled these resources into a comprehensivetable available on the VenomZone website ( https://venomzone.expasy.org/10897 ). Furthermore, we highlight the challenges currently faced by researchers in accessing and using these resources and emphasize the importance of community-driven interdisciplinary approaches. We conclude by underscoring the significance of enhancing standards, promoting inter operability, and encouraging data and method sharing within the venom research community.
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hal-04693027 , version 1 (10-09-2024)

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Giulia Zancolli, Björn Marcus von Reumont, Gregor Anderluh, Figen Caliskan, Maria Luisa Chiusano, et al.. Web of venom: exploration of big data resources in animal toxin research. GigaScience, 2024, 13, pp.giae054. ⟨10.1093/gigascience/giae054⟩. ⟨hal-04693027⟩
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