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Pré-Publication, Document De Travail Année : 2024

Reproducible Mapping of Tabular Data into Semantic Knowledge Graphs with OntoWeaver and BioCypher

Résumé

Large-scale high-level information fusion and data integration is a pressing need in several scientific domains. Recently, the biomedical community established BioCypher, a tool to help create large Semantic Knowledge Graphs (SKGs) in a simple and reproducible way. In this article, we introduce OntoWeaver, a companion tool to BioCypher that allows to easily extract tabular data into SKGs by using a simple declarative mapping. The use of OntoWeaver and BioCypher is demonstrated in two different use cases: cancer database integration and invasive species monitoring. We believe that OntoWeaver and BioCypher, both free and open-source software, can help several scientific communities working on SKGs and high-level information fusion problems.
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hal-04509632 , version 1 (18-03-2024)

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  • HAL Id : hal-04509632 , version 1

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Johann Dreo, Claire Laudy, Sebastian Lobentanzer, Marko Baric, Ekaterina Gaydukova, et al.. Reproducible Mapping of Tabular Data into Semantic Knowledge Graphs with OntoWeaver and BioCypher. 2024. ⟨hal-04509632⟩
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