miRBase alignment: ✓✓ presence of alignments that cover the miRNA locus (see reads cloud above)
Prediction : 19-39
g ucu c u acg- - -- c u- u
uuacg cgguuu gauucg uuggugcagg cggga gcuug gc cga gguuucauau ug c
||||| |||||| |||||| |||||||||| ||||| ||||| || ||| |||||||||| ||
aaugu gccaag cuaagu aacuacguuc guccu ugagu cg gcu ccaaagugug ac u
a u-- c c guca u au - uc c
Alignments
query 19 UCGCUUGGUGCAGGUCGGGAA 39
miRBase 1 UCGCUUGGUGCAGGUCGGG--
miRBase 2 UCGCUUGGUGCAGGUCGGGA-
miRBase 3 UCGCUUGGUGCAGGUCGGGAA
*******************
miRBase 1 : MIMAT0020985 |
miRBase 2 : MIMAT0022751 |
miRBase 3 : MIMAT0000198 | ath-miR168b-5p | gma-miR168a | ptc-miR168a-5p | ptc-miR168b-5p | bna-miR168a | vvi-miR168 | ccl-miR168 | crt-miR168 | rco-miR168 | aly-miR168a-5p | aly-miR168b-5p | tcc-miR168 | mtr-miR168b | mtr-miR168c-5p | vun-miR168 | mes-miR168a | cca-miR168a | lus-miR168a | lus-miR168b | nta-miR168d | nta-miR168e | mdm-miR168a | mdm-miR168b | ppe-miR168 | atr-miR168 | bra-miR168a-5p |
Prediction : 102-122
g ucu c u acg- - -- c u- u
uuacg cgguuu gauucg uuggugcagg cggga gcuug gc cga gguuucauau ug c
||||| |||||| |||||| |||||||||| ||||| ||||| || ||| |||||||||| ||
aaugu gccaag cuaagu aacuacguuc guccu ugagu cg gcu ccaaagugug ac u
a u-- c c guca u au - uc c
Alignments
query 102 CCUGCCUUGCAUCAACUGAAU 122
miRBase 1 CCUGCCUUGCAUCAACUGAAU
*********************
miRBase 1 : MIMAT0031130 |