Overview of results
5 candidates found.
Get results as
chr |
identifier |
miRBase ID |
position |
strand |
miRNA |
length |
quality |
reads |
1 |
ath-MIR837 |
MI0005393 |
6,520,941-6,521,124 |
+ |
AUCAGUUUCUUGUUCGUUUCA |
21 |
★ |
108 |
1 |
ath-MIR169h |
MI0000982 |
6,695,420-6,695,609 |
- |
UAGCCAAGGAUGACUUGCCUG |
21 |
★★ |
389 |
4 |
ath-MIR165b |
MI0000200 |
369,831-370,012 |
- |
UCGGACCAGGCUUCAUCCCCC |
21 |
★★ |
223338 |
4 |
ath-MIR5635d |
MI0019217 |
1,023,912-1,024,149 |
+ |
UGUUAAGGAGUGUUAACGGUG |
21 |
★ |
294 |
4 |
ath-MIR2936 |
MI0013366 |
1,046,804-1,046,983 |
- |
CUUGAGAGAGAGAACACAGACG |
22 |
|
5 |
- miRbase name: ath-MIR837
-
Chromosome: 1
-
Position: 6,520,941-6,521,124 (184 nt)
-
Strand: +
-
G+C content: 22.83 %
- miRNA sequence: AUCAGUUUCUUGUUCGUUUCA (21 nt)
-
miRNA precursor: [FASTA sequence]
[stem-loop structure]
-
Stability of the secondary structure of the precursor: MFE -85.20 kcal/mol |
AMFE -46.30 |
MFEI -2.03
-
Total number of reads mapped to the precursor: 108 [download]
- Quality: the locus contains more than 10 reads ★
UUUUUGAUAAAUACUUUUGUUUGCUUACAAGUAUAAAGUCAUCAUGUUUUUUUCAUCAGUUUCUUGUUCGUUUCAAAAUUAUGAUUUUUGUUUACUUACACUCAUAAUCUUGAAACGAACAAAAAACUGAUGGAAAAACAUGAGGACUUUAUACUUGUAAAUAAAUAAAAAUAUUUAUUAGAAA
(((((((((((((.(((((((((.((((((((((((((((.(((((((((((.(((((((((.(((((((((((((.(((((((....(((......))).))))))).))))))))))))).)))))))))))))))))))).)))))))))))))))).))))))))).)))))))))))))
<------miRBase------> <------miRBase------>
...................................................*********************................................................................................................................ length=21 depth=2
....................................................*********************............................................................................................................... length=21 depth=8
......................................................AUCAGUUUCUUGUUCGUUUCA............................................................................................................. length=21 depth=18
...........................................................................................................*********************........................................................ length=21 depth=3
................................................................................................................*********************................................................... length=21 depth=2
.....................................................................................................................................*********************.............................. length=21 depth=3
.....................................................................................................................................************************........................... length=24 depth=37
........................................................................................................................................*********************........................... length=21 depth=21
............................................................................................................................................*********************....................... length=21 depth=3
- miRbase name: ath-MIR169h
-
Chromosome: 1
-
Position: 6,695,420-6,695,609 (190 nt)
-
Strand: -
-
G+C content: 39.47 %
- miRNA sequence: UAGCCAAGGAUGACUUGCCUG (21 nt)
-
miRNA precursor: [FASTA sequence]
[stem-loop structure]
-
Stability of the secondary structure of the precursor: MFE -79.00 kcal/mol |
AMFE -41.58 |
MFEI -1.05
-
Total number of reads mapped to the precursor: 389 [download]
- Quality: the locus contains more than 10 reads, and more than half of them intersect either with the miRNA or the miRNA* ★★
UCAUAUAAGAGAAAAUGGUGACAUGAAGAAUGAGAACUUGUGUGGUAGCCAAGGAUGACUUGCCUGCGUUUUAGACCAUAUAUAUCAAAGACUCACUCGAUCGAUAGUCUUAGAGUUGGUUGGUCGUCAGGCAGUCUCCUUGGCUAUUCAAACAAUUCUCAUUCUCUUCAUUCACAUUUCUCUUUUUUGG
.((...((((((((...((((.((((((((((((((.((((.(((((((((((((.((((.(((((.......(((((..((..((.((((((...((....)).)))))).))..))..)))))..))))))))))))))))))).))).)))))))))))..))))))))))).))))))))...)).
<------miRBase------>
..........................*******************................................................................................................................................................. length=19 depth=17
...........................................*********************.............................................................................................................................. length=21 depth=7
...........................................**********************............................................................................................................................. length=22 depth=8
...........................................***********************............................................................................................................................ length=23 depth=7
.............................................*******************.............................................................................................................................. length=19 depth=4
.............................................********************............................................................................................................................. length=20 depth=44
.............................................UAGCCAAGGAUGACUUGCCUG............................................................................................................................ length=21 depth=245
.................................................................................................................................******************........................................... length=18 depth=8
.................................................................................................................................*******************.......................................... length=19 depth=26
.................................................................................................................................********************......................................... length=20 depth=9
- miRbase name: ath-MIR165b
-
Chromosome: 4
-
Position: 369,831-370,012 (182 nt)
-
Strand: -
-
G+C content: 37.91 %
- miRNA sequence: UCGGACCAGGCUUCAUCCCCC (21 nt)
-
miRNA precursor: [FASTA sequence]
[stem-loop structure]
-
Stability of the secondary structure of the precursor: MFE -66.50 kcal/mol |
AMFE -36.54 |
MFEI -0.96
-
Total number of reads mapped to the precursor: 223338 [download]
- Quality: the locus contains more than 10 reads, and more than half of them intersect either with the miRNA or the miRNA* ★★
UGAAGAGGCUAUUUCUGUUGUGGGGAAUGUUGUUUGGAUCGAGGAUAUCAUAAACGCAUACACAUGUUUAUAUGUUAUGAUGCAUUAUAUGACUGAUGUAAUGUACAUAUAUAUACAUACAUGCCACAUGGUAUCGUCGGACCAGGCUUCAUCCCCCUCAACAUGUUAAUUGCCUUCAAUCA
....(((((.(((.((((((.((((.(((..((((((.((((.((((((((....((((....((((..((((((.(((.((((((((((.....)))))))))))))))))))))))..))))...)))))))).)))).))))))..))).)))).))))).)..))).)))))......
<------miRBase------>
........................................................................................................................................********************.......................... length=20 depth=1251
........................................................................................................................................UCGGACCAGGCUUCAUCCCCC......................... length=21 depth=221300
- miRbase name: ath-MIR5635d
-
Chromosome: 4
-
Position: 1,023,912-1,024,149 (238 nt)
-
Strand: +
-
G+C content: 39.08 %
- miRNA sequence: UGUUAAGGAGUGUUAACGGUG (21 nt)
-
miRNA precursor: [FASTA sequence]
[stem-loop structure]
[optimal MFE structure]
-
Stability of the secondary structure of the precursor: MFE -135.40 kcal/mol |
AMFE -56.89 |
MFEI -1.46
-
Total number of reads mapped to the precursor: 294 [download]
- Quality: the locus contains more than 10 reads ★
.((((((((((((((((((.(((((.(((((((((((.(((((((((.((((((((.((((((((((((((((((.(((((((((((....((((((.(((((.((((..........)))).))))).))))))....((((....))))))))))))))).)))))))))))))))))).)))))))).))))))))).))))))))))).))))).)))))))))))))))))).
AGUUGACUUCUAAUUUAACCUAUAAGUUAUCGUUGACACGGCCAAAUCGACUCACCAUUAACACUUCUUAACAGCUCUCCUAACAGCGUAACUAACAACUGUUUUUGUCCUUAAACCAACGAUAACGGCUGUUAGGCCAUGUUUUGUAACGGCUGUUAGGAGCGCUGUUAAGGAGUGUUAACGGUGAGUCUAUUUGGCUGGGUCAACGAUAAAUUAUAUGUUAAAUUAGAAGUCAACA
.((((((((((((((((((.(((((.(((((((((((.(((((((((.((((((((.((((((((((((((((((.(((((((((((................................................................))))))))))).)))))))))))))))))).)))))))).))))))))).))))))))))).))))).)))))))))))))))))).
<------miRBase------>
............................************************.......................................................................................................................................................................................... length=24 depth=8
........................................................************************.............................................................................................................................................................. length=24 depth=3
............................................................************************.......................................................................................................................................................... length=24 depth=3
...............................................................************************....................................................................................................................................................... length=24 depth=5
.....................................................................************************................................................................................................................................................. length=24 depth=32
..............................................................................************************........................................................................................................................................ length=24 depth=6
............................................................................................................************************.......................................................................................................... length=24 depth=10
.................................................................................................................***********************...................................................................................................... length=23 depth=5
.................................................................................................................************************..................................................................................................... length=24 depth=35
..................................................................................................................************************.................................................................................................... length=24 depth=19
.....................................................................................................................********************..................................................................................................... length=20 depth=3
..........................................................................................................................................*************************........................................................................... length=25 depth=3
............................................................................................................................................***********************........................................................................... length=23 depth=5
.............................................................................................................................................**********************........................................................................... length=22 depth=8
..............................................................................................................................................*********************........................................................................... length=21 depth=3
..............................................................................................................................................************************........................................................................ length=24 depth=7
.................................................................................................................................................******************........................................................................... length=18 depth=17
............................................................................................................................................................***********************........................................................... length=23 depth=15
.....................................................................................................................................................................************************................................................. length=24 depth=3
......................................................................................................................................................................************************................................................ length=24 depth=6
- miRbase name: ath-MIR2936
-
Chromosome: 4
-
Position: 1,046,804-1,046,983 (180 nt)
-
Strand: -
-
G+C content: 41.11 %
- miRNA sequence: CUUGAGAGAGAGAACACAGACG (22 nt)
-
miRNA precursor: [FASTA sequence]
[stem-loop structure]
-
Stability of the secondary structure of the precursor: MFE -60.40 kcal/mol |
AMFE -33.56 |
MFEI -0.82
-
Total number of reads mapped to the precursor: 5 [download]
- Quality: random distribution
CCAUUUUCGAAAGCCUUGAGAGAGAGAACACAGACGAUACCAACUUUCUUCAAUCUCGUUGCCGCAGUAUAAUUAUCUCAUUCCUCGGAUAUAUCUCUCCUUCUGCGGCGGCGACAAGAAGCUACAAGAAUAAAAAGUCUGUUUUCUCUCUUUUCAAGAAACCACUUACUUCGAAAAUGG
(((((((((((...((((((((((((((.((((((........(((.((((....((((((((((((..............((....)).............))))))))))))...))))....)))........)))))).))))))).)))))))...........)))))))))))
<------miRBase------->