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Chapitre D'ouvrage Année : 2023

The Chlamydomonas nuclear genome

Résumé

CHAPTER CONTENTS INTRODUCTION THE CHLAMYDOMONAS REFERENCE GENOME A. Versions 1-5: improvements of a draft genome B. Version 6: Long reads, misassembly corrections and a new reference strain STRUCTURAL ANNOTATIONS AND GENE ORGANIZATION A. Versions 3-5: The history of gene model annotation in Chlamydomonas B. Version 6 structural annotations C. Gene IDs D. Gene structure and organization E. Intron abundance and lengths F. Alternative splicing G. Polycistronic gene expression H. Non-coding RNA genes GENOME ARCHITECTURE A. Centromeres B. Telomeres and subtelomeres C. Transposable elements D. Genome-wide patterns of methylation E. Base composition, mutation, recombination and codon usage F. The mating-type locus GENOME EVOLUTION A Genomic variation among laboratory strains B. Population & species-level genomic variation C. Comparative genomics in the Reinhardtinia clade ONLINE RESOURCES FOR THE CHLAMYDOMONAS GENOME FUTURE PERSPECTIVES
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hal-04338417 , version 1 (12-12-2023)

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Rory J Craig, Olivier Vallon. The Chlamydomonas nuclear genome. The Chlamydomonas Sourcebook Volume 1: Introduction to Chlamydomonas and Its Laboratory Use, Elsevier, pp.85-115, 2023, ⟨10.1016/B978-0-12-822457-1.00017-0⟩. ⟨hal-04338417⟩
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