<?xml version="1.0" encoding="utf-8"?>
<TEI xmlns="http://www.tei-c.org/ns/1.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns:hal="http://hal.archives-ouvertes.fr/" xmlns:gml="http://www.opengis.net/gml/3.3/" xmlns:gmlce="http://www.opengis.net/gml/3.3/ce" version="1.1" xsi:schemaLocation="http://www.tei-c.org/ns/1.0 http://api.archives-ouvertes.fr/documents/aofr-sword.xsd">
  <teiHeader>
    <fileDesc>
      <titleStmt>
        <title>HAL TEI export of hal-04189164</title>
      </titleStmt>
      <publicationStmt>
        <distributor>CCSD</distributor>
        <availability status="restricted">
          <licence target="https://creativecommons.org/publicdomain/zero/1.0/">CC0 1.0 - Universal</licence>
        </availability>
        <date when="2026-05-02T10:19:51+02:00"/>
      </publicationStmt>
      <sourceDesc>
        <p part="N">HAL API Platform</p>
      </sourceDesc>
    </fileDesc>
  </teiHeader>
  <text>
    <body>
      <listBibl>
        <biblFull>
          <titleStmt>
            <title xml:lang="en">On the equivalence of binary phase masks optimized for localization or detection in extended depth-of-field localization microscopy</title>
            <author role="aut">
              <persName>
                <forename type="first">Olivier</forename>
                <surname>Lévêque</surname>
              </persName>
              <email type="md5">83f225c59c913fb6cbfe45e7b22f4663</email>
              <email type="domain">onera.fr</email>
              <ptr type="url" target="https://olivierleveque.com/"/>
              <idno type="idhal" notation="string">oleveque</idno>
              <idno type="idhal" notation="numeric">182920</idno>
              <idno type="halauthorid" notation="string">48713-182920</idno>
              <idno type="GOOGLE SCHOLAR">https://scholar.google.com/citations?user=TooV_xYAAAAJ</idno>
              <idno type="ORCID">https://orcid.org/0009-0009-0378-043X</idno>
              <idno type="IDREF">https://www.idref.fr/260481858</idno>
              <idno type="VIAF">https://viaf.org/viaf/136165322644916021036</idno>
              <affiliation ref="#struct-1042172"/>
              <affiliation ref="#struct-1051108"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Caroline</forename>
                <surname>Kulcsár</surname>
              </persName>
              <email type="md5">fe5ed609ebcf75392b4b5b9ebd5bbb3a</email>
              <email type="domain">institutoptique.fr</email>
              <idno type="idhal" notation="string">caroline-kulcsar</idno>
              <idno type="idhal" notation="numeric">10391</idno>
              <idno type="halauthorid" notation="string">32002-10391</idno>
              <idno type="ORCID">https://orcid.org/0000-0002-2840-2111</idno>
              <idno type="IDREF">https://www.idref.fr/166879738</idno>
              <idno type="VIAF">https://viaf.org/viaf/259506745</idno>
              <affiliation ref="#struct-1051108"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Laurent</forename>
                <surname>Cognet</surname>
              </persName>
              <idno type="halauthorid">142-0</idno>
              <affiliation ref="#struct-407321"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">François</forename>
                <surname>Goudail</surname>
              </persName>
              <email type="md5">71a47c8dc93f9f5b9ee8248ec5dc8b88</email>
              <email type="domain">institutoptique.fr</email>
              <idno type="idhal" notation="numeric">976638</idno>
              <idno type="halauthorid" notation="string">997435-976638</idno>
              <idno type="ORCID">https://orcid.org/0000-0003-2342-1257</idno>
              <idno type="IDREF">https://www.idref.fr/059297905</idno>
              <affiliation ref="#struct-1051108"/>
            </author>
            <editor role="depositor">
              <persName>
                <forename>Olivier</forename>
                <surname>Lévêque</surname>
              </persName>
              <email type="md5">c0ed03d1e21ea15b0df32d1a92fb5454</email>
              <email type="domain">icloud.com</email>
            </editor>
          </titleStmt>
          <editionStmt>
            <edition n="v1" type="current">
              <date type="whenSubmitted">2023-08-28 10:53:05</date>
              <date type="whenModified">2025-03-17 19:47:36</date>
              <date type="whenReleased">2023-08-28 11:27:51</date>
              <date type="whenProduced">2023</date>
              <date type="whenEndEmbargoed">2023-08-28</date>
              <ref type="file" target="https://hal.science/hal-04189164v1/document">
                <date notBefore="2023-08-28"/>
              </ref>
              <ref type="file" subtype="author" n="1" target="https://hal.science/hal-04189164v1/file/JOSA_A_492654.pdf" id="file-4189164-3651541">
                <date notBefore="2023-08-28"/>
              </ref>
            </edition>
            <respStmt>
              <resp>contributor</resp>
              <name key="866213">
                <persName>
                  <forename>Olivier</forename>
                  <surname>Lévêque</surname>
                </persName>
                <email type="md5">c0ed03d1e21ea15b0df32d1a92fb5454</email>
                <email type="domain">icloud.com</email>
              </name>
            </respStmt>
          </editionStmt>
          <publicationStmt>
            <distributor>CCSD</distributor>
            <idno type="halId">hal-04189164</idno>
            <idno type="halUri">https://hal.science/hal-04189164</idno>
            <idno type="halBibtex">leveque:hal-04189164</idno>
            <idno type="halRefHtml">&lt;i&gt;Journal of the Optical Society of America. A Optics, Image Science, and Vision&lt;/i&gt;, 2023, 40 (9), pp.1753-1761. &lt;a target="_blank" href="https://dx.doi.org/10.1364/josaa.492654"&gt;&amp;#x27E8;10.1364/josaa.492654&amp;#x27E9;&lt;/a&gt;</idno>
            <idno type="halRef">Journal of the Optical Society of America. A Optics, Image Science, and Vision, 2023, 40 (9), pp.1753-1761. &amp;#x27E8;10.1364/josaa.492654&amp;#x27E9;</idno>
            <availability status="restricted">
              <licence target="https://about.hal.science/hal-authorisation-v1/">HAL Authorization<ref corresp="#file-4189164-3651541"/></licence>
            </availability>
          </publicationStmt>
          <seriesStmt>
            <idno type="stamp" n="IOGS" corresp="PARISTECH">Institut d'Optique Graduate School</idno>
            <idno type="stamp" n="ONERA">ONERA - Office National d'Études et de Recherches Aérospatiales</idno>
            <idno type="stamp" n="CNRS">CNRS - Centre national de la recherche scientifique</idno>
            <idno type="stamp" n="PARISTECH">ParisTech</idno>
            <idno type="stamp" n="LCFIO" corresp="IOGS">Laboratoire Charles Fabry</idno>
            <idno type="stamp" n="LP2N" corresp="IOGS">Laboratoire Photonique, Numérique et Nanosciences</idno>
            <idno type="stamp" n="LCF_SPIM" corresp="LCFIO">Groupe Imagerie et Information</idno>
            <idno type="stamp" n="UNIV-PARIS-SACLAY">Université Paris-Saclay</idno>
            <idno type="stamp" n="UNIVERSITE-PARIS-SACLAY" corresp="UNIV-PARIS-SACLAY">Université Paris-Saclay</idno>
            <idno type="stamp" n="GS-COMPUTER-SCIENCE">Graduate School Computer Science</idno>
            <idno type="stamp" n="GS-PHYSIQUE">Graduate School Physique</idno>
            <idno type="stamp" n="INSTITUT-SCIENCES-LUMIERE">Institut des Sciences de la Lumière</idno>
            <idno type="stamp" n="DEMR_ONERA" corresp="ONERA">DEMR ONERA</idno>
            <idno type="stamp" n="UNIVERSITE-BORDEAUX">Université de Bordeaux</idno>
          </seriesStmt>
          <notesStmt>
            <note type="audience" n="2">International</note>
            <note type="popular" n="0">No</note>
            <note type="peer" n="1">Yes</note>
          </notesStmt>
          <sourceDesc>
            <biblStruct>
              <analytic>
                <title xml:lang="en">On the equivalence of binary phase masks optimized for localization or detection in extended depth-of-field localization microscopy</title>
                <author role="aut">
                  <persName>
                    <forename type="first">Olivier</forename>
                    <surname>Lévêque</surname>
                  </persName>
                  <email type="md5">83f225c59c913fb6cbfe45e7b22f4663</email>
                  <email type="domain">onera.fr</email>
                  <ptr type="url" target="https://olivierleveque.com/"/>
                  <idno type="idhal" notation="string">oleveque</idno>
                  <idno type="idhal" notation="numeric">182920</idno>
                  <idno type="halauthorid" notation="string">48713-182920</idno>
                  <idno type="GOOGLE SCHOLAR">https://scholar.google.com/citations?user=TooV_xYAAAAJ</idno>
                  <idno type="ORCID">https://orcid.org/0009-0009-0378-043X</idno>
                  <idno type="IDREF">https://www.idref.fr/260481858</idno>
                  <idno type="VIAF">https://viaf.org/viaf/136165322644916021036</idno>
                  <affiliation ref="#struct-1042172"/>
                  <affiliation ref="#struct-1051108"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Caroline</forename>
                    <surname>Kulcsár</surname>
                  </persName>
                  <email type="md5">fe5ed609ebcf75392b4b5b9ebd5bbb3a</email>
                  <email type="domain">institutoptique.fr</email>
                  <idno type="idhal" notation="string">caroline-kulcsar</idno>
                  <idno type="idhal" notation="numeric">10391</idno>
                  <idno type="halauthorid" notation="string">32002-10391</idno>
                  <idno type="ORCID">https://orcid.org/0000-0002-2840-2111</idno>
                  <idno type="IDREF">https://www.idref.fr/166879738</idno>
                  <idno type="VIAF">https://viaf.org/viaf/259506745</idno>
                  <affiliation ref="#struct-1051108"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Laurent</forename>
                    <surname>Cognet</surname>
                  </persName>
                  <idno type="halauthorid">142-0</idno>
                  <affiliation ref="#struct-407321"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">François</forename>
                    <surname>Goudail</surname>
                  </persName>
                  <email type="md5">71a47c8dc93f9f5b9ee8248ec5dc8b88</email>
                  <email type="domain">institutoptique.fr</email>
                  <idno type="idhal" notation="numeric">976638</idno>
                  <idno type="halauthorid" notation="string">997435-976638</idno>
                  <idno type="ORCID">https://orcid.org/0000-0003-2342-1257</idno>
                  <idno type="IDREF">https://www.idref.fr/059297905</idno>
                  <affiliation ref="#struct-1051108"/>
                </author>
              </analytic>
              <monogr>
                <idno type="halJournalId" status="VALID">6575</idno>
                <idno type="issn">1084-7529</idno>
                <idno type="eissn">1520-8532</idno>
                <title level="j">Journal of the Optical Society of America. A Optics, Image Science, and Vision</title>
                <imprint>
                  <publisher>Optical Society of America</publisher>
                  <biblScope unit="volume">40</biblScope>
                  <biblScope unit="issue">9</biblScope>
                  <biblScope unit="pp">1753-1761</biblScope>
                  <date type="datePub">2023</date>
                  <date type="dateEpub">2023-08-18</date>
                </imprint>
              </monogr>
              <idno type="doi">10.1364/josaa.492654</idno>
            </biblStruct>
          </sourceDesc>
          <profileDesc>
            <langUsage>
              <language ident="en">English</language>
            </langUsage>
            <textClass>
              <classCode scheme="halDomain" n="phys.phys.phys-optics">Physics [physics]/Physics [physics]/Optics [physics.optics]</classCode>
              <classCode scheme="halDomain" n="spi.signal">Engineering Sciences [physics]/Signal and Image processing</classCode>
              <classCode scheme="halTypology" n="ART">Journal articles</classCode>
              <classCode scheme="halOldTypology" n="ART">Journal articles</classCode>
              <classCode scheme="halTreeTypology" n="ART">Journal articles</classCode>
            </textClass>
            <abstract xml:lang="en">
              <p>Binary annular masks have recently been proposed to extend the depth of field (DoF) of single-molecule localization microscopy (SMLM). A strategy for designing optimal masks has been introduced based on maximizing the emitter localization accuracy, expressed in terms of Fisher information, over a targeted DoF range. However the complete post-processing pipeline to localize a single emitter consists of two successive steps: the detection, where the regions containing emitters are determined, and the localization, where the sub-pixel position of each detected emitter is estimated. Phase masks usually optimize only this second step. The presence of a phase mask also affecting the detection, the purpose of this article is to quantify and mitigate this effect. Using a rigorous framework built from a detection-oriented information theoretical criterion (Bhattacharrya distance), we demonstrate that in most cases of practical significance, annular binary phase masks maximizing Fisher information do also maximize the detection probability. This result supports the common design practice consisting of optimizing a phase mask by maximizing the Fisher information only.</p>
            </abstract>
          </profileDesc>
        </biblFull>
      </listBibl>
    </body>
    <back>
      <listOrg type="structures">
        <org type="laboratory" xml:id="struct-1042172" status="VALID">
          <orgName>DEMR, ONERA, Université Paris Saclay [Palaiseau]</orgName>
          <date type="start">2020-01-01</date>
          <desc>
            <address>
              <addrLine>91120 Palaiseau</addrLine>
              <country key="FR"/>
            </address>
            <ref type="url">http://www.onera.fr</ref>
          </desc>
          <listRelation>
            <relation active="#struct-300024" type="direct"/>
            <relation active="#struct-419361" type="direct"/>
          </listRelation>
        </org>
        <org type="researchteam" xml:id="struct-1051108" status="VALID">
          <orgName>Laboratoire Charles Fabry / Imagerie et Information</orgName>
          <date type="start">2020-01-01</date>
          <desc>
            <address>
              <country key="FR"/>
            </address>
          </desc>
          <listRelation>
            <relation active="#struct-1051106" type="direct"/>
            <relation active="#struct-300036" type="indirect"/>
            <relation active="#struct-419361" type="indirect"/>
            <relation name="UMR8501" active="#struct-441569" type="indirect"/>
          </listRelation>
        </org>
        <org type="laboratory" xml:id="struct-407321" status="VALID">
          <idno type="IdRef">155056131</idno>
          <idno type="RNSR">201119489R</idno>
          <idno type="ROR">03vdg7e33</idno>
          <orgName>Laboratoire Photonique, Numérique et Nanosciences</orgName>
          <orgName type="acronym">LP2N</orgName>
          <date type="start">2014-11-17</date>
          <desc>
            <address>
              <addrLine>Institut d’Optique d’AquitaineRue François Mitterrand33400 TalenceFrance</addrLine>
              <country key="FR"/>
            </address>
            <ref type="url">http://www.lp2n.fr</ref>
          </desc>
          <listRelation>
            <relation active="#struct-259761" type="direct"/>
            <relation active="#struct-300036" type="direct"/>
            <relation name="UMR5298" active="#struct-441569" type="direct"/>
          </listRelation>
        </org>
        <org type="institution" xml:id="struct-300024" status="VALID">
          <idno type="ROR">https://ror.org/005y2ap84</idno>
          <orgName>ONERA</orgName>
          <desc>
            <address>
              <addrLine>Office National d’Études et de Recherches Aéronautiques29, avenue de la Division Leclerc - BP 72 - 92322 CHATILLON CEDEX</addrLine>
              <country key="FR"/>
            </address>
            <ref type="url">https://www.onera.fr/fr</ref>
          </desc>
        </org>
        <org type="institution" xml:id="struct-419361" status="VALID">
          <idno type="IdRef">241345251</idno>
          <idno type="ROR">https://ror.org/03xjwb503</idno>
          <orgName>Université Paris-Saclay</orgName>
          <desc>
            <address>
              <addrLine>Bâtiment Bréguet, 3 Rue Joliot Curie 2e ét, 91190 Gif-sur-Yvette</addrLine>
              <country key="FR"/>
            </address>
            <ref type="url">https://www.universite-paris-saclay.fr/fr</ref>
          </desc>
        </org>
        <org type="laboratory" xml:id="struct-1051106" status="VALID">
          <idno type="IdRef">110047702</idno>
          <orgName>Laboratoire Charles Fabry</orgName>
          <orgName type="acronym">LCF</orgName>
          <date type="start">2020-01-01</date>
          <desc>
            <address>
              <addrLine>2 avenue Augustin Fresnel, 91127 Palaiseau Cedex</addrLine>
              <country key="FR"/>
            </address>
            <ref type="url">http://www.institutoptique.fr</ref>
          </desc>
          <listRelation>
            <relation active="#struct-300036" type="direct"/>
            <relation active="#struct-419361" type="direct"/>
            <relation name="UMR8501" active="#struct-441569" type="direct"/>
          </listRelation>
        </org>
        <org type="institution" xml:id="struct-300036" status="VALID">
          <idno type="IdRef">110047702</idno>
          <orgName>Institut d'Optique Graduate School</orgName>
          <orgName type="acronym">IOGS</orgName>
          <desc>
            <address>
              <addrLine>2 avenue Augustin Fresnel, 91127 Palaiseau Cedex</addrLine>
              <country key="FR"/>
            </address>
            <ref type="url">https://www.institutoptique.fr</ref>
          </desc>
        </org>
        <org type="regroupinstitution" xml:id="struct-441569" status="VALID">
          <idno type="IdRef">02636817X</idno>
          <idno type="ISNI">0000000122597504</idno>
          <idno type="ROR">https://ror.org/02feahw73</idno>
          <orgName>Centre National de la Recherche Scientifique</orgName>
          <orgName type="acronym">CNRS</orgName>
          <date type="start">1939-10-19</date>
          <desc>
            <address>
              <country key="FR"/>
            </address>
            <ref type="url">https://www.cnrs.fr/</ref>
          </desc>
        </org>
        <org type="institution" xml:id="struct-259761" status="VALID">
          <idno type="IdRef">175206562</idno>
          <idno type="ROR">https://ror.org/057qpr032</idno>
          <orgName>Université de Bordeaux</orgName>
          <orgName type="acronym">UB</orgName>
          <desc>
            <address>
              <addrLine>35, place Pey Berland - 33076 Bordeaux</addrLine>
              <country key="FR"/>
            </address>
            <ref type="url">http://www.u-bordeaux.fr/</ref>
          </desc>
        </org>
      </listOrg>
    </back>
  </text>
</TEI>