Development of a set of SNP markers for population genetics of the sea peach (Halocynthia papillosa) - Archive ouverte HAL
Article Dans Une Revue Conservation Genetics Resources Année : 2023

Development of a set of SNP markers for population genetics of the sea peach (Halocynthia papillosa)

Résumé

A set of single nucleotide polymorphism (SNP) markers was developed from the transcriptome of the solitary ascidian Halocynthia papillosa. 1399 putative SNPs with coverage larger than 100 reads were identified, and a selected set of 320 SNPs was tested using a MassARRAY System on 95 samples from the NW Mediterranean. A total of 175 SNPs were successfully genotyped, polymorphic and in Hardy-Weinberg equilibrium over all samples. The newly developed loci will be a valuable tool for population genetics studies of this endemic ascidian species of the Mediterranean Sea.

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Sciences de l'environnement Biodiversité et Ecologie
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https://hal.science/hal-04004739

Soumis le : samedi 25 février 2023-14:38:36

Dernière modification le : mardi 19 novembre 2024-14:58:03

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hal-04004739 , version 1 (25-02-2023)

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Mariana Padrón, Marine Milhes, Adline Delcamp, Erwan Guichoux, Katell Guizien. Development of a set of SNP markers for population genetics of the sea peach (Halocynthia papillosa). Conservation Genetics Resources, 2023, ⟨10.1007/s12686-023-01313-7⟩. ⟨hal-04004739⟩

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