Summary The Northern Silvery Grebe Podiceps juninensis is an aquatic bird species considered Vulnerable to extinction in Ecuador and Endangered in Colombia. Globally the species is considered Near Threatened. Herein we report recent changes in distribution and population trends for the subpopulation in the northern Andes (Ecuador, Colombia), which is small and isolated. The Northern Silvery Grebe has undergone two documented extirpations, and at least one colonisation event, over the last three decades. More than 90% of the subpopulation relies on two wetlands, La Mica and Colta lakes in Ecuador, with the latter facing an accelerated sedimentation process which jeopardizes the fate of the wetland, and the species, in the mid-term. The population of La Mica lost 80% of its birds in 2000 after the damming of the lake, but then remained stable over our census period (2004–2013). In contrast, the Colta population results from a recent colonisation in the early 2000s, and has experienced an exponential growth since then (annual population multiplication rate: 1.464). The growth of this population is so fast that it must include an important contribution of immigrants. The temporal coincidence between the drop in population size at lake La Mica and the colonisation of lake Colta suggests that the Colta population was founded by immigrants from La Mica. Finally, the absence of current reports of the species at wetlands in Colombia suggests that the species remains at very low numbers, bolstering the shrinkage in northern distribution.