MIxS-SA: a MIxS extension defining the minimum information standard for sequence data from symbiont-associated micro-organisms - Archive ouverte HAL Accéder directement au contenu
Article Dans Une Revue ISME Communications Année : 2022

MIxS-SA: a MIxS extension defining the minimum information standard for sequence data from symbiont-associated micro-organisms

Christopher Hunter
  • Fonction : Auteur
Adam Schneider

Résumé

The symbiont-associated (SA) environmental package is a new extension to the minimum information about any (x) sequence (MIxS) standards, established by the Parasite Microbiome Project (PMP) consortium, in collaboration with the Genomics Standard Consortium. The SA was built upon the host-associated MIxS standard, but reflects the nestedness of symbiont-associated microbiota within and across host-symbiont-microbe interactions. This package is designed to facilitate the collection and reporting of a broad range of metadata information that apply to symbionts such as life history traits, association with one or multiple host organisms, or the nature of host-symbiont interactions along the mutualism-parasitism continuum. To better reflect the inherent nestedness of all biological systems, we present a novel feature that allows users to co-localize samples, to nest a package within another package, and to identify replicates. Adoption of the MIxS-SA and of the new terms will facilitate reports of complex sampling design from a myriad of environments.
Fichier principal
Vignette du fichier
Jorge 2022.pdf (1.07 Mo) Télécharger le fichier
Origine : Fichiers éditeurs autorisés sur une archive ouverte

Dates et versions

hal-03701954 , version 1 (05-01-2023)

Licence

Paternité

Identifiants

Citer

Fátima Jorge, Jaelle Brealey, Paul Brindley, Marie Buysse, Cinzia Cantacessi, et al.. MIxS-SA: a MIxS extension defining the minimum information standard for sequence data from symbiont-associated micro-organisms. ISME Communications, 2022, 2 (1), pp.9. ⟨10.1038/s43705-022-00092-w⟩. ⟨hal-03701954⟩
120 Consultations
45 Téléchargements

Altmetric

Partager

Gmail Facebook X LinkedIn More